<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21280

Description Uncharacterized protein
SequenceMAADYWRSSQANHWLLSPYELKLSRLEDIRYAGSEERVAAVTIWMANAISQLAKRFGLRQRVTATATVFFHRFYSVPPNAYCNTDPCMVATACLYVASKVEETPLHVRSVIVEAARAWTEYGHSSFPTSATGLAEMEFYLLRDLDYHLILHHPYRPLMAIVGAAGKTALEKSEAEAKTKAAKGGATLGSRGQAGLGAQAEALGVGSSKLGQPNFDMASLSQADVGKGGVSEEQDRAKAEEAAARKAMTAGDYGLPVARAEEIDDGVVQMAWFLLNDTYRHSPLHLLYPPYVLALSALYLALVLHETSREKMLASVKRMEERRKLWAEEVKRKEMEEEHSAKKVKLDESTPEASSAAKNAATASTSSFGRPGITSSHSSSPYATQSGNSRLPHGLPPRPGHLPPRPGAPLSREPSSSGNPLGRNTPASSTPYPAKGLPGLASSSFGAASLRSPSSTDPSQGVTGVDGTSFNSEAGPTPPPDVLTFLASLNLSPTHQLASCIQGMLDGYAVWGKVMRDIDGAEGSKRVMGWLENWRRMREEELRVLDMEALAAAAAAAAAATS
Length561
PositionKinase
OrganismPseudomicrostroma glucosiphilum
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Exobasidiomycetes> Microstromatales> Microstromatales incertae sedis> Pseudomicrostroma.
Aromaticity0.07
Grand average of hydropathy-0.316
Instability index49.54
Isoelectric point6.96
Molecular weight60212.28
Publications
PubMed=29771364

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21280
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     100.91|      20|      26|     425|     444|       1
---------------------------------------------------------------------------
  398-  414 (22.32/ 7.93)	..........PGHLPPRPGAPLSREPS
  415-  441 (31.71/14.46)	SSGnplgrntPASSTPYPAKGLPGLAS
  442-  466 (21.49/ 7.35)	SSFgaaslrsPSSTD..PSQGVTGVDG
  467-  487 (25.40/10.07)	TSF.....nsEAGPTP.PPDVLTFLAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.16|      33|     201|     310|     365|       2
---------------------------------------------------------------------------
  325-  365 (40.02/30.01)	WAEEVKRkeMEEEHsaKKVkLDestPEASSAAKNAATASTS
  529-  561 (57.14/21.35)	WLENWRR..MREEE..LRV.LD...MEALAAAAAAAAAATS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.63|      14|      23|     162|     176|       3
---------------------------------------------------------------------------
  162-  176 (18.29/14.16)	GAAGKTALeKSEAEA
  188-  201 (24.34/14.18)	GSRGQAGL.GAQAEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.59|      22|     270|       4|      26|       4
---------------------------------------------------------------------------
    4-   26 (39.31/33.00)	DYWRSSQAnHWLLSPYELKLSRL
  276-  297 (42.28/29.99)	DTYRHSPL.HLLYPPYVLALSAL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21280 with CycC domain of Kingdom Fungi
Unable to open file!