<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21276

Description Uncharacterized protein
SequenceMAVVSSMPAIQPVERVRYPVISPNMAHGGEIVEEPVARMIEDMIYVAVAKDVKDSKSTLVWAVHNSGGKKICLAHVHQPAQKIPCMGGWFPASSLKDEEVRAYREIEKQNMNKILEDYLRICRQMGVRAEKLHIEMDCIEKGIVELISQHGIRKLVMGAAADKYHSRKMMDLKSKKAIYVHQQAPVSCHIQFICKGHLIHTREGNSDGVETDIPLLQPSPNTDPEQSPHYFRSRSVTLGQNNRAKLTNPAQDLYRRVRSANMEKYGRSITEATSSDGTEGLSTPSRYEAGGSPDEWDRVSRRSVSGYSSCSSALGDLALVQCERIEGSENGSTESLALSHFKELNHSSPPSVLDGNIDDSLYDHLEQAMAEAENAKREAFQEGIRRGKAEKDAIDAIRRAKASELLYNEELRQRKEIEEALAREREELEKMKKQRDEVMEELRAALDQKSLLESQIAESDQMVVSLEEKIISAVELLQNYKKERDELHVERDNALREVEELRRKQGEASSSHLPQFFTEFSFTEIEEATRNFDPSLKIGEGGYGSIFKGSLRHTQVAIKLLHAHSMQGPSEFQQEVDVLSKLRHSNLVTLIGACPESWTLIYEYLPNGSLEDRLSCKDNTPPLSWQTRIRIATELCSVLIFLHSSKPYGIVHGDLKPANILLDSNFVSKLSDFGICRLLSRGEGSSNNTTLFCRTDPKGTFAYMDPEFVSSGELTPKSDVYSFGIILLRLLTGRPALGIPKEVQYALDSGKLETLLDPLAGDWPFVQAEQLARLAMRCCEMSRKCRADLVSDVWRVLEPMRASCGCSSSFRLGTEEHFQPPSYFICPIFQEVMQDPHVAADGFTYEAEALRGWLDSGHDTSPMTNLKLEHKNLVPNHALRSAIQEWLQQH
Length890
PositionTail
OrganismPrunus yedoensis var. nudiflora
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.06
Grand average of hydropathy-0.471
Instability index52.49
Isoelectric point5.79
Molecular weight100087.37
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21276
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.06|      26|      68|     402|     437|       1
---------------------------------------------------------------------------
  402-  429 (35.89/24.57)	ASELLYNEElRQRKEI....EEALaREREELE
  473-  502 (36.16/18.57)	AVELLQNYK.KERDELhverDNAL.REVEELR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.97|      28|     283|     546|     588|       2
---------------------------------------------------------------------------
  193-  232 (41.77/14.38)	ICKGHLIHTregnsdgvETDIPLLQpspnTDPEQSPHYFR
  546-  573 (51.20/49.27)	IFKGSLRHT........QVAIKLLH....AHSMQGPSEFQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.35|      17|     354|     308|     333|       3
---------------------------------------------------------------------------
  316-  332 (28.71/30.38)	DLALVQCERIEGSENGS
  335-  351 (29.64/ 7.46)	SLALSHFKELNHSSPPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21276 with Med32 domain of Kingdom Viridiplantae
Unable to open file!