<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21274

Description Pre-mRNA-processing protein 40A isoform X4
SequenceMANNPQFSGLQPLRPPMVGSVDPPRSLPPMSFQFRPVVPAPHSQEFISVASQNFQHVGRGVPLMNVRLPPPTHQPQFSQPMQQLPPRSGQPGHGMLPSQAMPLPVSQPNRNFASELPLPQPNSQGPNNAMPNLGGPRTPLSSSYTFAPSSYGQMPRSFNDSTQYQSISQLHAPNVSSEGQVTPLQHTGERPAVITSIAPETGVRPNPAGGTVAEWREHTSAEGRRFYYNRRTGLSTWEKPFELMTPLERADASTNWKEFTSPDGRKYYYNKVTKESRWIMPEELKLARELVEKAPVKEMQQEMLVNHHATVTVSPPVAEADTLVNAATVASSPVSVAPVIATGDGDVQTATASRSSTSPVVASPVIENPNGVQTPVVVPSSTVSSAEAAVTINDTVAEPMESLNNLSAQDFVSSADGVPVQESEEATDDVTGKKINDIASEEKPVDREPISYENKLEAKDAFKALLESTNIGSDWTWDRAMRVIINDKRYGALKTLGERKQAFNEFLVQRKKQEAEERRIKQKKAREEFKKMLEECSELTSSTRWGKVESIFEHDERFKAVERDRDRRDMFENYVEELQKKERAKTMEERKHNIMEYRQFLESCDFIKANSQWRKVQDRLEADERCSRLEKIDRLEFFQEELRKTERKNRDDFRKLMEEHLAAGTLTAKSHWRDYCMKVKDLPTYLAVASNTSGSTPKDLFEDVVEELQKQYHEDKTRIKDAVKLGKVLLTSTWKLEDFKTVISNDIGSPPISDANLKLVFDELLERVKEKEEKEAKKRKRLADDFSHLLSSIKEITPSSKWEDYKSLLEGSQECSAIGEESFCKEIFDKHVMQLKELAKEKERKRKEEKEKKEKERDDRERRRTKQRREKEVEYEREREERLKKDGLDSEIADVTDIHDSKEKKRSGKDDNKKHRKRHHSDEDHANGNENDRSKRSHGSSSDHKKSRRAPGHESDTESRHRRHKRDHRNGSRRSGDHDELEDGEFGDVGESR
Length993
PositionUnknown
OrganismPrunus yedoensis var. nudiflora
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.06
Grand average of hydropathy-1.033
Instability index56.80
Isoelectric point6.60
Molecular weight113410.29
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21274
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     518.76|      67|      67|     523|     589|       1
---------------------------------------------------------------------------
  457-  521 (79.16/42.67)	.EAK....D.AFKALLES....TNIGSD...WTWDRAM...RVIINDKRYGAL......................KTLGE...RKQAFNEFLVQRKKQEAEERRIK
  523-  589 (107.11/60.30)	KKAR....E.EFKKMLEE...CSELTSS...TRWGKVE...SIFEHDERFKAV......................ERDRD...RRDMFENYVEELQKKERAKTMEE
  591-  646 (83.73/45.55)	KHNI....M.EYRQFLES...CDFIKAN...SQWRKVQ...DRLEADERCSRL......................EK.ID...RLEFFQ...EELRK.....T..E
  647-  711 (66.89/34.93)	RKNR....D.DFRKLMEEhlaAGTLTAK...SHWRDYC...MKVKDLPTYLAV......................ASNTSgstPKDLFEDVVEELQKQ........
  715-  778 (58.28/29.50)	DKTRikdaV.KLGKVL........LT.S...T.W.KLEdfkTVISNDIGSPPI.......................SDAN...LKLVFDELLERVKEKEE.KEAKK
  780-  867 (75.85/40.58)	KRLA....D.DFSHLLSS...IKEITPS...SKWEDYK...SLLEGSQECSAIgeesfckeifdkhvmqlkelakEKERK...RKEEKEKKEKERDDRERRRT.KQ
  868-  918 (47.74/22.85)	RREK....EvEYEREREE.....RLKKDgldSEIADVT...DI..HDSK..........................EKKRS...GKD..DN......KKHRKR....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.53|      15|      15|      68|      82|       2
---------------------------------------------------------------------------
   21-   31 (19.43/ 7.27)	VDPPRSLP.....PMS
   68-   82 (34.12/18.59)	LPPPTHQPQFSQ.PMQ
   84-   99 (22.98/10.00)	LPPRSGQPGHGMlPSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     139.56|      30|      40|     214|     243|       3
---------------------------------------------------------------------------
  176-  194 (19.52/ 6.14)	......SSEGQ......VTPLQhTGERPAVI
  214-  243 (60.74/32.98)	EWREHTSAEGRRFYYNRRTGLS.TWEKPFEL
  255-  284 (59.30/32.04)	NWKEFTSPDGRKYYYNKVTKES.RWIMPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     116.03|      23|      23|     327|     349|       4
---------------------------------------------------------------------------
  309-  326 (25.79/13.77)	ATV........TVSPPVAEADTLVNA
  327-  349 (40.37/26.04)	ATVA...SSPVSVAPVIATGDGDVQT
  350-  374 (29.78/17.12)	ATASrssTSPVVASPVIENPNG.VQT
  376-  392 (20.09/ 8.96)	VVVP...SSTVSSA......EAAVTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.72|      14|      16|     106|     121|       5
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  106-  120 (22.51/11.46)	SQ.PNrNFASELPLPQ
  123-  137 (22.21/ 8.80)	SQgPN.NAMPNLGGPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.68|      21|      31|     933|     960|       6
---------------------------------------------------------------------------
  934-  960 (34.82/22.76)	SKRshgsssDHKK.SRRAPGHE.......SD.TESR
  964-  993 (25.86/10.40)	HKR......DHRNgSRRSGDHDeledgefGDvGESR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21274 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APVIATGDGDVQTATASRSSTSPVVASPVIENPNGVQTPVVVPS
2) GRGVPLMNVRLPPPTHQPQFSQPMQQLPPRSGQPGHGMLPSQAMPLPVSQPNRNFASELPLPQPNSQGPNNAMPNLGGPRTPLSSSYTFAPSSYGQMPRSFNDSTQYQSISQLHAPNVSSEGQVTPLQHTGERPAVITSIAPETGVRPNPAGGTVAEWR
3) LAKEKERKRKEEKEKKEKERDDRERRRTKQRREKEVEYEREREERLKKDGLDSEIADVTDIHDSKEKKRSGKDDNKKHRKRHHSDEDHANGNENDRSKRSHGSSSDHKKSRRAPGHESDTESRHRRHKRDHRNGSRRSGDHDELEDGEFGDVGESR
4) MANNPQFSGLQPLRPPMVGSVDPPRSLPPMSFQFRPVV
5) SSADGVPVQESEEATDDVTGKKINDIASEEKPVDREPISY
337
58
838
1
413
380
216
993
38
452










Molecular Recognition Features






MoRF SequenceStartStop




NANANA