<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21272

Description Uncharacterized protein
SequenceMHQPQLGPQSNVTGLQQQQHLGTQSGNSSMQTNQHSVHLLQQSKVQGQQQQQHQSSSNLLPTQGQQSQPQASQQQLLSQIQSQPTQMQQLGLQQQSNPLQRDMQQRLQASGQVPGTMLQPQNIMDQQKQLYQSQRPLPETSSTSLDSTAQTGHATGGDWQEEVFQKIKGMKEMYLPELSEMYQKIATKLQQHDSLPQQPKSEQLEKLKMFRTMLERLISVLQISKSSISPGLKDKLVLYEKQIVNFINTNRPRKPVSSLQQGQLPPPHMHSMQQSQSQITQVQSHENQMNPQLQSMNLQGSVATMQQSNMTSLQQSSMSALSGVSTAQQNMMNSLPPSSNMDSGQGNALNSLQQVPVGSNQQTSVSAPQQANMNALSSQSGVNMLQANMNSIQPNSDETGDGCKAGVFQQHLSAGQRAYPHPQLKSGSPFPTNQLLQAASPQISQHSSPQVDQQNLLTHPKAGTPLQTASSPFVIPSPSTPMAPSPMPGDSEKPSSLSNAGNVGHQQTTGWSAGPVPCHWHPWSIRPSPLLAEFSVPDTHVNALSTISGKSSVTEQPLERLIKAVKSMSPNALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNVMTHDGTNGTRKMRRYTSAVPLNVVSSAGSINDSFKQLTSSETSDLESTATSRIKRPRIEANHALLEEIREINRRLIDTVVDVSDEDVDPSAAAAEGGEGTIVKCSFDAVALSPNLKSQYASAQMSPIQPLRLLVPMNYPNCSPILLDKFPVEVSKEYEDLSVKAKSKFSISLRSISQPMSLGEIARTWDVCARAVISEHAQQSGGGSFSSKYGTWENCLSAA
Length842
PositionTail
OrganismPrunus yedoensis var. nudiflora
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.03
Grand average of hydropathy-0.592
Instability index65.36
Isoelectric point8.07
Molecular weight91307.35
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21272
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     308.56|      37|      38|      38|      74|       1
---------------------------------------------------------------------------
    5-   35 (45.55/14.04)	QLGPQSNVTGLQQQQ..H................L.....GTQ.SG.....NSSMQTNQH
   38-   74 (70.15/26.03)	HLLQQSKVQGQQQQQ..H...QS...SS....NLL.....PTQ.GQ.....QSQPQASQQ
   75-  112 (40.27/11.46)	QLLSQIQSQPTQMQQlgL...QQ...QS....N.......PLQrDM.....QQRLQASGQ
  116-  151 (43.61/13.10)	TMLQPQNIMDQQKQL..Y...QS...QR....P.L.....PET.SS.....TSLDSTAQT
  270-  296 (39.38/11.03)	HSMQQSQSQITQVQS..H...EN...QM....N.....................PQLQSM
  319-  361 (32.40/ 7.63)	SAL..SGVSTAQQNM..M...NSlppSS....NMD.....SGQ.GNalnslQQVPVGSNQ
  406-  454 (37.21/ 9.98)	GVFQQHLSAGQRAYP..HpqlKS...GSpfptNQLlqaasPQI.SQ.....HSSPQVDQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.78|      14|      14|     465|     478|       2
---------------------------------------------------------------------------
  465-  478 (24.97/12.37)	PLQTASSPFVI.PSP
  481-  494 (25.63/12.91)	PMAPSPMPGDS.EKP
  515-  529 (28.18/15.03)	PVPCHWHPWSIrPSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     128.77|      44|     353|     172|     234|       3
---------------------------------------------------------------------------
  172-  234 (60.17/66.49)	EMYLPelsemyQKIATKLQQHDSLPQQPKseqleklkmfrtmLERLI.SVLQISKSSISPGLKD
  248-  268 (26.57/ 6.26)	NTNRP......RKPVSSLQQ.GQLP.PPH...................................
  545-  579 (42.02/18.61)	...............STISGKSSVTEQP..............LERLIkAVKSMSPNALSASVSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     225.72|      70|     112|     601|     672|       5
---------------------------------------------------------------------------
  601-  672 (111.01/72.25)	AAVGEDlvAMTKCRLQA....RNVMTHDGTNGTRKMRRYTSAVPLNVVSSAGSINDSFKQLTSSETSDLESTATSR
  714-  787 (114.71/69.48)	AEGGEG..TIVKCSFDAvalsPNLKSQYASAQMSPIQPLRLLVPMNYPNCSPILLDKFPVEVSKEYEDLSVKAKSK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21272 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MHQPQLGPQSNVTGLQQQQHLGTQSGNSSMQTNQHSVHLLQQSKVQGQQQQQHQSSSNLLPTQGQQSQPQASQQQLLSQIQSQPTQMQQLGLQQQSNPLQRDMQQRLQASGQVPGTMLQPQNIMDQQKQLYQSQRPLPETSSTSLDSTAQTGHATGGDWQEE
2) NRPRKPVSSLQQGQLPPPHMHSMQQSQSQITQVQSHENQMNPQLQSMNLQGSVATMQQSNMTSLQQSSMSALSGVSTAQQNMMNSLPPSSNMDSGQGNALNSLQQVPVGSNQQTSVSAPQQANMNALSSQSGVNMLQANMNSIQPNSDETGDGCKAGVFQQHLSAGQRAYPHPQLKSGSPFPTNQLLQAASPQISQHSSPQVDQQNLLTHPKAGTPLQTASSPFVIPSPSTPMAPSPMPGDSEKPSSLSNAGNVGHQQTTGWSAGPVPC
1
250
162
518










Molecular Recognition Features






MoRF SequenceStartStop




NANANA