<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21268

Description Putative mediator of RNA polymerase II transcription subunit 26b
SequenceMTTKSGSLNYWRNYFRTANSDIFDIIDHAIMVAASDCPKEFKLRRDRIAERLFSCRLTRCSGCDKVELAVPGGDGEDDNDDGGCKSGFDRDGGEVEAGASKESKVNSSRDDQGEMNMNQLSNYSYGLAEALTAEIEEESEIVGEVFRIKEIFNNCEEESDTVLFESLRKLQLMALNVETLKATEIGKAVNGLRKHGSKKIRHLARSLIDGWKDMVDEWVNATTAIAGTEAMSDSVNPSFDDEEGLPSPPLDEGAFFATQTTSMELSQFFDGMDDFGNPRNNCDNGRKPSVEKQNIVKQKQQPSKEANVLPKENKNEQVKKQEVVKPNKLSNTDSGPGRPPKVNMEQKVNNETKIQQKTDEVAIQKRQLTGQQNKFKCSDEVAVQVKLEATKRKLQERYQQAENAKRQRTVQVMELQDLPKQGLARRNPHVKPGNHNRHWAHGRR
Length444
PositionUnknown
OrganismPrunus yedoensis var. nudiflora
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.05
Grand average of hydropathy-0.925
Instability index43.96
Isoelectric point5.97
Molecular weight49956.23
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21268
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.90|      15|      18|     359|     376|       1
---------------------------------------------------------------------------
  359-  376 (22.03/24.04)	DEVAIQ......KRQLtgqQNKFK
  379-  399 (20.87/12.54)	DEVAVQvkleatKRKL...QERYQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.62|      20|      27|     284|     307|       3
---------------------------------------------------------------------------
  284-  307 (28.96/26.04)	NGRKPSVEKQNIVKqkqqPSKEAN
  312-  331 (33.66/19.73)	ENKNEQVKKQEVVK....PNKLSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.71|      28|      29|     224|     251|       4
---------------------------------------------------------------------------
  224-  251 (49.98/28.44)	AIAGTEAMSDSVNPSFD..DEEGLPSPPLD
  254-  283 (47.72/26.88)	AFFATQTTSMELSQFFDgmDDFGNPRNNCD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21268 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EATKRKLQERYQQAENAKRQRTVQVMELQDLPKQGLARRNPHVKPGNHNRHWAHGRR
2) SQFFDGMDDFGNPRNNCDNGRKPSVEKQNIVKQKQQPSKEANVLPKENKNEQVKKQEVVKPNKLSNTDSGPGRPPKVNMEQKVNNETKIQQKTDEVAIQKRQLTGQQNKFKCSDEVAV
388
266
444
383










Molecular Recognition Features






MoRF SequenceStartStop




1) ARRNPHVKPGNHNRHWAHGRR
2) KKIRH
424
198
444
202