<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21250

Description ATP-dependent DNA helicase Q-like 4A isoform X1
SequenceMSPMACQIQNIGRLPSAQVQKAWHALSNLQISHRNYTKPGKTVLVKDASSRYCRDVGRTATPSSCDIDKSRTHMRTHQHINGTNSRNSEASTCLGNCFPSSNVNVADVGNFFGGQSQIRASMVNNFDSRVPGGSFSNNSVHTSQIKHSAKVLVNDIDDDDEILENIDIDQIVEQYQSSCTPQPSISKLPPITPSMDKDNIARQEVTSLPPDLCSNCIHGFKIGLCPEAASHLQEMKDTLITISNELLDDVNDLSPTRIEKLRQDRLQLNKKIQQLERYLCNNSLDEERRKSHFSASTATPRPFQYETTEAAAFRTDTMRFDSQVQSQNVPGDYERCNSSSVSFSSVDGFGFSSCPVEREPYIPKFVEVNYIEGSNDNKWSSNNFPWTKKLEANNKKVFGNHSFRLNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGVTLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEIFRELNSEYCKYKLLYVTPEKVAKSDVLLRQLENLNARQMLARIVIDEAHCVSQWGHDFRPDYQALGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVIPKTKKCLDDIDKFIKENHYDESGIIYCLSRMDCEKVAERLQECGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGVIEQSPLASGYNRTNTTNSGRVLETNTENLLRMVSYCENDVDCRRILQLIHLGEKFDCTTCKKTCDNCLKIKSFVEKDVTGIAKQLVELVKLTGQQFSSSHILEVYRGSFSQFVKKHRHQTVSLHGVGKHLAKGEASRVLRHLVTEDLLAEEVKKSDVYGSVSSILKVNELKACELFSGRKTILIRFPSSVKASKQKNSEVISAKGSLTSGKQSPPHIGTEQPQSKANSDLSTKIFTSLKMLRTNLVRESADGVMAYHIFANTTLQNMSSRIPRTKEELLEINGIGKGKLGKYGDRILETIEAAIKEYYKTAKNSTSSNDSNDIKRKRDGNNGNENFDDDDFTKSTDRSKKRAPKRQNKTIEAYSYAEPDYPQLIDDELDLYDYDFEVNASDMKTKENAGGRVLPQ
Length1147
PositionUnknown
OrganismPrunus yedoensis var. nudiflora
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.07
Grand average of hydropathy-0.532
Instability index48.92
Isoelectric point8.22
Molecular weight128961.28
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21250
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.11|      14|     412|     600|     613|       1
---------------------------------------------------------------------------
  600-  613 (25.75/15.76)	SVIPKTKKCLDDID
 1011- 1024 (24.36/14.54)	SRIPRTKEELLEIN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.32|      28|     828|     244|     273|       2
---------------------------------------------------------------------------
  244-  273 (39.65/30.37)	NELLDDvNDLS.PTRIEKLRQDRLQlNKKIQ
 1075- 1103 (45.66/26.17)	NENFDD.DDFTkSTDRSKKRAPKRQ.NKTIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.73|      48|     828|      33|     101|       4
---------------------------------------------------------------------------
   41-   92 (74.57/81.04)	KTVLVK.....DASSRYCRDVgRTATPSSCDIDKSRTHMRTHQhinGTNSRNSEAST
  922-  974 (74.16/33.07)	KTILIRfpssvKASKQKNSEV.ISAKGSLTSGKQSPPHIGTEQ...PQSKANSDLST
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21250 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) YKTAKNSTSSNDSNDIKRKRDGNNGNENFDDDDFTKSTDRSKKRAPKRQNKTIEAYSYAEP
1050
1110










Molecular Recognition Features






MoRF SequenceStartStop




1) DIKRKR
2) IEAYSY
3) ILETIEAA
4) LYDYDF
1064
1102
1038
1122
1069
1107
1045
1127