<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21245

Description Mediator of RNA polymerase II transcription subunit 33A-like
SequenceMPSFISVDSSNIAATKAARFVLNSKNEKDASGGGSDGDTSIKSGGDMRHLIVEACIARNLIDTSAYFWPGYVSASTISPSDTSPVQKSLWSTFMEGAPLRDALIKSLIRTPVSSLAEVEKLYHIALTGSEEEKSAAAKILCGASLKSGWNIQEHVVHFVVKLLSPPVPPNYSGSRSHLIDYMSMLSALLFGTSSVDTVHILSLHGMVPEVAASLITLCEVFGSLKPTSSNKSSIGDESSVYMVFSLAFLFLLRLWKFYRPPLEQYITERGGAVGGVLTLEYLLLLRNGHTAPARNETNSSGDQLESASREPMCIDSYPKLQAWYCQNKSCIASTLSGLSSGNPVHEVANKILSMIYWKITRTGDPSSNSSGPSSSSISGSPADTGETCAILTACAYGRLSSRDLTTGLRDLVEFLPASLAAIISYFSAEVTRGIWKQVAMNGIDWPSPAAILQSVESEIKEILNAVGVNVPSCGISTVTLPLPLAALVSLTITFKLEKSLEYIHAAAGLALENCASGCPWPSMPIVGCLWAQKVRRWHHFIVVSCSRSVFRQNKDAVAQLLRSCFSSFLGSLHASTSSLSSQSSVNGLLGFTIADISARPSVAPGFLYLRSCRTIHVVQHVNDVIVGLVAEYAAKLAERCASTDSPSLKSSQASLSLAIAKAKEVASLGASLLCVAGGVQLVQELYRETIPTWLLSSKEEKLGEANDVSRVMEGYAMAYLVILSGSIEWGIGDNLPSWTLSRRARIVGSHMDFLAGVLKGNISLGCDPATWKAYVSCLVGLMVNFAPAWIREVKVETLRKLAGGLRGWHECELALSLLERGGASAIGSAAELVHALDGV
Length839
PositionTail
OrganismPrunus yedoensis var. nudiflora
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.07
Grand average of hydropathy0.190
Instability index48.61
Isoelectric point6.81
Molecular weight89657.91
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21245
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     154.86|      57|      65|     544|     607|       1
---------------------------------------------------------------------------
  500-  529 (35.15/11.10)	...................................LEYIHAA..........AGLALENCASGCPWPSM.PivGCL
  544-  607 (84.73/49.16)	SCsRS..VFRQNKDAV........AQLLRSCFSSFLGSLHASTSSLSsqssvNGLLGFTIADISARPSVaP..GFL
  611-  656 (34.98/10.03)	SC.RTihVVQHVNDVIvglvaeyaAKLAERCASTDSPSLKSSQASLS.............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     223.55|      64|     370|     351|     417|       2
---------------------------------------------------------------------------
  298-  355 (59.24/24.74)	..............NSSG...DQLESasrepmcIDSYPKLQAWYCQN.KS.......CIASTLSG..LSSGnpVHEVAN...KILSMI
  356-  422 (103.80/53.95)	YW..KITRTGDPSSNSSG...PSSSS.......ISGSPADTGETCAILTA.......CAYGRLSSRDLTTG..LRDLVEflpASLAAI
  425-  488 (60.50/24.77)	YFsaEVTRGIWKQVAMNGidwPSPAA.......ILQSV..ESEIKEILNAvgvnvpsCG...ISTVTLPLP..LAALV..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.21|      26|     550|     252|     279|       3
---------------------------------------------------------------------------
  252-  279 (44.07/40.41)	LRLWkfYRPPLEQYITERGG..AVGGVLTL
  805-  832 (42.14/30.50)	LRGW..HECELALSLLERGGasAIGSAAEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.85|      20|      44|     688|     707|       4
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  688-  707 (34.29/20.79)	ETIPTWLLSSKEEKLGEAND
  733-  752 (36.56/22.65)	DNLPSWTLSRRARIVGSHMD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21245 with Med33 domain of Kingdom Viridiplantae
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