<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21238

Description Mediator of RNA polymerase II transcription subunit 33A-like
SequenceMGSMGMVMGSELERRVVELVTAKQKESPVVWAMEVGNWVEAVPSIELGEVLVSQLCFQHNRPSLWKFIDHALSSGLLCPLHVLSILSSRVVPHRRAQPEAYRLYLELLRRYAFSFGPLAGNASKEKITESIDAALQLSQTFKVHVVELGHALVLFFFSVIISLIDSTLDDWGFKMTSRKRPRSAFGGSDNDMEIDSRESQNLKVKEHHERIRKRNSLLAIEVLAKPTESRKSLVLLRLVHLNMPERFNGLLQRLRFLEGRQLASSDLNSALQLLARLSANIHSERDPLEGPIPHLEARLCVLLSIVPLAIANVLEDKIKVNSSSIEGDTVSGNMESGYGDKMDGKANTSRKQGLISSLQVLGNFSGLLCPPSSVVDSSNIAATKAARFVLNSKNEKDASGGGSDGDTSIKSGGDMRHLIVEACIARNLIDTSAYFWPGYVSASTISPSDTSPVQKSLWSTFMEGAPLRDALIKSLIRTPVSSLAEVEKLYHIALTGSEEEKSAAAKILCGASLKSGWNIQEHVVHFVVKLLSPPVPPNYSGSRSHLIDYMSMLSALLFGTSSVDTVHILSLHGMVPEVAASLITLCEVFGSLKPTSSNKSSIGDESSVYMVFSLAFLFLLRLWKFYRPPLEQYITERGGAVGGVLTLEYLLLLRNGHTAPARNETNSSGDQLESASREPMCIDSYPKLQAWYCQNKSCIASTLSGLSSGNPVHEVANKILSMIYWKITRTGDPSSNSSGPSSSSISGSPADTGEDMCQRPMLPAWEILEAIPFVLEAILTACAYGRLSSRDLTTGLRDLVEFLPASLAAIISYFSAEVTRGIWKQVAMNGIDWPSPAAILQSVESEIKEILNAVGVNVPSCGISTVTLPLPLAALVSLTITFKLEKSLEYIHAAAGLALENCASGCPWPSMPIVGCLWAQKVRRWHHFIVVSCSRSVFRQNKDAVAQLLRSCFSSFLGSLHASTSSLSSQSSVNGLLGFTIADISARPSVAPGFLYLRSCRTIHVVQHVNDVILGLVAEYAAKLAERCASTDSPSLKSSQASLSLAIAKAKEVASLGASLLCVAGGVQLVQELYRETIPTWLLSSKEEKLGEANDVSRVMEGYAMAYLVILSGSIEWGIGDNLPSWTLSRRARIVGSHMDFLAGVLEGNISLGCDPATWKAYVSCLVGLMVNFAPAWIREVKVETLRKLASGLRGWHECELALSLLERGGASAIGSAAELVHVLDGA
Length1227
PositionTail
OrganismPrunus yedoensis var. nudiflora
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.07
Grand average of hydropathy0.114
Instability index49.01
Isoelectric point6.76
Molecular weight132966.52
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21238
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.02|      16|      62|     336|     355|       1
---------------------------------------------------------------------------
  336-  355 (22.84/27.21)	SGYGDkmDGkaNTSRKQG.....LI
  399-  419 (25.17/14.62)	SGGGS..DG..DTSIKSGgdmrhLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.99|      10|      62|     803|     812|       2
---------------------------------------------------------------------------
  803-  812 (17.17/ 8.49)	LPASLAAIIS
  868-  877 (17.82/ 9.09)	LPLPLAALVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.04|      26|     100|      42|      72|       3
---------------------------------------------------------------------------
   42-   72 (38.92/42.23)	VPSIELGEVLVsqLCFQHNRPSLwkfIDHAL
  143-  168 (45.12/29.74)	VHVVELGHALV..LFFFSVIISL...IDSTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     205.90|      63|      65|     962|    1026|       4
---------------------------------------------------------------------------
  442-  476 (31.42/14.39)	...ASTISPSDTSPVQKSLwSTFMEGAPLRDALIKSLI................................
  959- 1025 (87.99/64.55)	SlhASTSSLSSQSSVNGLL.GFTIADISARPSVAPGFLYLRScrTIHVVQHV..NDVILGLVAEYAAKLA
 1026- 1091 (86.50/55.86)	ErcASTDSPSLKSS.QASL.SLAIAKAKEVASLGASLLCVAG..GVQLVQELyrETIPTWLLSSKEEKLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.56|      32|      67|     658|     694|       5
---------------------------------------------------------------------------
  658-  691 (56.49/44.55)	TAPARNETNSSGDQLESASREP......MCidSYPKLQAW
  728-  765 (57.08/29.59)	TRTGDPSSNSSGPSSSSISGSPadtgedMC..QRPMLPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.58|      21|     301|      74|      96|       8
---------------------------------------------------------------------------
   74-   96 (34.31/29.53)	SGLLCPLHvlSILSSRVVPHRRA
  365-  385 (37.27/25.06)	SGLLCPPS..SVVDSSNIAATKA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21238 with Med33 domain of Kingdom Viridiplantae
Unable to open file!