<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21235

Description U-box domain-containing protein 52
SequenceMALFRSRSVGEDVGPTLVAINRDKNSQCAVKWAVDNLLGDKNAHCTLIHVRSHSFHHHGRPPTEAELQQFFLPYRGFCARKGIVAKEVVLHDIDVPNALADYVVSNSICNIVVGASHHNALTRKFRRTDVATSLLKSVPETCAVYVISKGKIQISRSATGPQTPKSNAATPRNNSFQRTPLSSFLHGVPDFEDVISQGSSAGGISLNKSSDFKHVPPKAHRSGSKTNSPTQSVTSVTSDKLSYGNSISGGSDFSGPLSFQSNGSDNVDFSMNSEGSINSFSSHTPSALDAEMRRLRLELKQTMDMCTSACKEALAAKEKTRDLRIWKTSEEHKLEKAKLAEEAALALADVERQKSKAATEAARMAQRLADMETHKRKIAERKAKQEAEERRRAMDALAQNHIRYRRYTIEEIELATDYFKISNKVGEGGYGPVYRAWLDHTAVAIKVLRPDISQGQRQFQQEVEVLSCIRHPHMVLLVGACPEYGCLIYEYMENGSLEDRLFLKSNTPPIPWGVRFKIAAEIATALLFLHQTKPEPLVHRDLKPANILLDRNYVSKIADVGLARLVPPSVADAVTQYRMTAAAGTFCYIDPEYQQTGMLGVKSDIYSLGVMLLQIITAKPAMGLSHQVEEAIEKGAFAEILDPAVTDWPVEEALSYAKMALKCCELRRRDRPDLSTVILPELNRLRDLGMKNEASEVADGQDPYVSQFSASLPPVGSTSSVSQINVRRLLRMESVGKMWSFKNSFHLKRGSATSCSSSSSKKHAGKLNKKQMEGCWSFVSNCSSVPHTPPLKRFSSFGF
Length799
PositionTail
OrganismPrunus yedoensis var. nudiflora
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.07
Grand average of hydropathy-0.364
Instability index43.16
Isoelectric point9.06
Molecular weight88299.64
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21235
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.87|      28|      40|      95|     124|       1
---------------------------------------------------------------------------
   95-  124 (43.07/33.76)	VPNALADYVVSNSicNIVVGASHHNALTRK
  138-  165 (49.81/31.55)	VPETCAVYVISKG..KIQISRSATGPQTPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.57|      14|      15|     241|     254|       2
---------------------------------------------------------------------------
  195-  213 (18.30/ 8.57)	ISQGSSAGGislnkSSDFK
  241-  254 (26.16/15.33)	LSYGNSISG.....GSDFS
  257-  270 (24.10/13.56)	LSFQSNGSD.....NVDFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.36|      17|      37|     336|     358|       6
---------------------------------------------------------------------------
  342-  358 (28.57/26.15)	EAA.LA..LADVERQKSKAA
  360-  379 (21.79/ 6.49)	EAArMAqrLADMETHKRKIA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21235 with Med32 domain of Kingdom Viridiplantae
Unable to open file!