<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21234

Description U-box domain-containing protein 33-like
SequenceMELIQPSHPLHGSAGESLSGFSSPVSFSRGFVRTPTTSHLAEIFEEEDSGGGVDKVHVAVGKSVEKAVSLLHWTFKHFGCKEICILHVHQPSQLIPTLLGKLPASQANAEVVSAFRREEGERKMKLLQNYLRVCSRAKVKASIAMVEAGEIQKGIVDLVNRHGVRKLVMGAVPENCMKVKKNSSKANYAAKYAALFCEIWFINKGKHVWTREASEGQSSPPSCRQLQIAKVLPRENKEFHEESAASPTLSCSTNTSLPYNIHNSISSSTSSGSGYNSAEGRMSSDSDINVEEQSLYGRLAEATLEAEASKDKAFAELLKRKNLESEAMKAIYKVKQFELAHAREVKLRTEAEDALRTTIGEQQKLLQEKEEVSREIKRTMTNIALLDSRAQEANRRFNEASGEVRLIQTSIATLQQEKQSIQRQKMEALRWLERWRNHRQAGAANCNGLIGSAEELPKTVAIRKLHPHNMQGQAEFQQEVQVLGKLQHPHLVTLLGVCPEAWSLVYEHLSNGSLQDHLFRKSNVSSVPWKTRTRIIAEISSALCFLHSSKPEKIVHGDLKPQNILLDSELSCKICDFGICRLVTEDNLYCRSFRRGTEPKGAFPYTDPELQRIGVLTPKSDIYSFGLIILQLVTRRPPVGLASEVRKAVLCGNLASILDSSAGEWPITVARRLVDLGLQCCELNSIERPEITPALVRELHQLHAPEERPVPSFFLCPILQEIMHDPQVAADGFTYEGEALRGWLQNCRETSPMTNLKLSHLHLTPNHALRHAIQDWLCKS
Length780
PositionTail
OrganismPrunus yedoensis var. nudiflora
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.06
Grand average of hydropathy-0.361
Instability index53.87
Isoelectric point8.46
Molecular weight87111.64
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21234
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.33|      17|     269|     375|     392|       1
---------------------------------------------------------------------------
  375-  391 (28.39/19.62)	EIKRTMTNIALLDSRAQ
  403-  419 (25.94/12.00)	EVRLIQTSIATLQQEKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.24|      16|      16|     252|     267|       2
---------------------------------------------------------------------------
  251-  266 (29.36/21.32)	CSTNTSLPYN.IHNSIS
  267-  283 (23.88/15.88)	SSTSSGSGYNsAEGRMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.47|      18|      20|     299|     317|       4
---------------------------------------------------------------------------
  299-  317 (25.04/19.61)	LAEATLEAEASKD....KAFaEL
  318-  339 (25.43/14.88)	LKRKNLESEAMKAiykvKQF.EL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.54|      25|     206|     446|     471|       5
---------------------------------------------------------------------------
  446-  471 (43.51/39.31)	CNGLI....GSAEELPKTVAiRKLHPHNMQ
  651-  679 (41.03/31.11)	CGNLAsildSSAGEWPITVA.RRLVDLGLQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21234 with Med32 domain of Kingdom Viridiplantae
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