<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21232

Description Pre-mRNA-processing protein 40A isoform X1
SequenceMSSQSKVQYSLGKVPFSWENKPGVSKATQPPHPYRELPPPPCPCGEAPPKLSLQDFHLPLPPCTFQPLSRSSSTKAFRKHEDPFLVAFQECTKPPEGKAKDKTTSSNKYRFRSELGSWFGFGLSCKQSSSVRDDSLSARISSSIVRQQEQVLAPLIAHSFPHLLPNCICAEMANNPQSSAAQPFRPPPVASLGPQSFGSSPSLQYRPVVPTQQGQQFIQSASQQFQPVGQGIPSSNVGMPASQSQQLQFSQPMQPYPLRPSQPGHATPSSQALPMQYMQTRPITSVPSQSQQPALPFNNQMPGLAGGGMPYSSSYMFAPPSYAQPQNNVSSSSQFQPMSQVQAHVTATGQPWMSSGNQGAAVPTPVQQSGQQPSSTTFTDSAVNVPSQTQQSSSDWQEHTSGDGRRYYFNRRTKQSSWEKPLELMTPMERADASTVWKEYTSSDGKKYYYNKVTRESKWTIPEELKAQRELPGNTFRNEFDFSCPSCCCSAETPMGSSSVGPSTSSALPGMVSSPVAVIPVSSFSNPSPLAPTGSSVASGAQSSITGSVGIQPPVVTVTPLAASVSGSTGVPPTLVNTNTKSVSTYENVTSQEIGSADDGAFTQDIEEAKRGMAVAGKVNVTPSEEKTVDEEPLVYANKQEAKNAFKALLESANVHSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLENEERRMRQKKAREEFSKMLEESKELTSATRWRTSRDREDLYESYIVELERKEKEKAAEEHKQNIAEYRKFLESCDFIKVSLVKGMCEQPVAESSRSLRDDERCLRLEKLDRLLIFQDYIRDLEKEEEEQKKIQKEQLRRVERKNRDEFRKLMEEHVADGILTAKTHWRDYCMKVKDLSSYEAVASNTSGSTPKELFEDVAEELEKQYHEDKARIKDAMKLGKVTLASTLTFEEFKVAILEDIGFPSISDINFKLVYEELLERAKEKEEKEAKKRHRLGDDFNKLLHTFKEITASSNWEDCKHLFEETQEYRSIGEENFSREVFEEYVTNLQEKAKEEERKREEEKAKKEREREEKEKRKDKERKEKEKEREREKEKGKERSKKDETDSENVDVTDSHGHKEDKKREKDKDRKHRKRHQSSMDEVGSDKEEKEESKKRRHSSDRKRSRKHTPESDSESRHRRHKREHQDGSRRNVGYGELEDGEVGEDGEIQ
Length1189
PositionUnknown
OrganismPrunus yedoensis var. nudiflora
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.07
Grand average of hydropathy-1.030
Instability index65.75
Isoelectric point6.84
Molecular weight134799.55
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21232
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     153.10|      29|      29|    1030|    1058|       1
---------------------------------------------------------------------------
 1030- 1058 (45.33/23.01)	EKAKEEERKREEEKAKKERER............EEK.EKRK....D
 1061- 1093 (35.72/16.47)	RKEKEKEREREKEKGKERSKK............DET.DSENvdvtD
 1094- 1135 (33.19/14.75)	SHGHKEDKKREKDKDRKHRKRhqssmdevgsdkEEKeESKK....R
 1138- 1166 (38.85/18.59)	SSDRKRSRKHTPESDSESRHR............RHK.REHQ....D
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     194.72|      39|      39|     386|     424|       2
---------------------------------------------------------------------------
  312-  352 (49.31/21.21)	SSSYMFAPPSYAQPQN.....nvSSSSQfQPMSQVQAHVTATGQPW
  353-  381 (28.90/ 9.43)	.......MSSGNQGAAV......PTPVQ.QSGQQPSSTTFTDS...
  386-  407 (31.24/10.78)	.......................PSQTQ.QSSSDWQEHTSGDGRRY
  408-  448 (56.35/25.27)	YFNRRTKQSSWEKPLEL....mtPMERA.DASTVWKEYTSSDGKKY
  449-  482 (28.92/ 9.45)	YYNKVTRESKWTIPEELkaqrelPGNTF.RNEFDF...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.55|      15|      15|     495|     509|       3
---------------------------------------------------------------------------
  176-  190 (23.94/ 9.55)	PQSSAAQP.FRPPPVA
  502-  517 (19.61/ 6.49)	PSTSSALPgMVSSPVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     143.30|      33|      39|     227|     264|       4
---------------------------------------------------------------------------
   26-   49 (38.64/13.32)	.........KA..TQPPHP.YRELPPPPC...PCGEAPP
  239-  274 (57.47/29.64)	MPASQSQQLQF..SQPMQP.YPLRPSQPGhatPSSQALP
  275-  310 (47.19/15.81)	MQYMQTRPITSvpSQSQQPaLPFNNQMPG...LAGGGMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     228.78|      39|      39|     628|     666|       5
---------------------------------------------------------------------------
  628-  665 (49.62/27.95)	..TVDE..EPLVYANKQEAKNA..........FKALLESAN...VHSDWTW.....................EQTM
  666-  694 (27.94/12.41)	ReII.........NDKRYG..A..........LKTLGERKQ...AFNEY.L.....................GQR.
  695-  732 (54.86/31.71)	K.KLEN..EERRMRQKKAREEF..........SKMLEESKE...LTSATRW......................RTS
  828-  890 (36.16/18.30)	K.KIQK..EQLRRVERKNRDEF..........RKLMEEHVAdgiLTAKTHWrdycmkvkdlssyeavasntsGSTP
  952-  999 (39.71/20.85)	..LVYE..ELLERAKEKEEKEAkkrhrlgddfNKLLHTFKE...ITASSNW.....................EDCK
 1000- 1024 (20.49/ 7.07)	H.LFEEtqEYRSIGE....ENF................SRE...VFEEY...........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.20|      16|      39|     518|     533|       6
---------------------------------------------------------------------------
  518-  533 (26.95/14.44)	VIPV....SSFSNPSPLAPT
  539-  554 (24.91/12.75)	SGAQ....SSITGSVGIQPP
  555-  574 (20.34/ 8.99)	VVTVtplaASVSGSTGVPPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.85|      20|      30|      56|      75|       9
---------------------------------------------------------------------------
   56-   75 (38.51/20.38)	FHLPLPPCTFQPLSRS.....SSTK
   84-  108 (30.33/14.48)	FLVAFQECTKPPEGKAkdkttSSNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.90|      45|     304|     581|     626|      11
---------------------------------------------------------------------------
  581-  626 (70.28/50.42)	KSVSTYENVTS...........QEIGSADDGAFTQDIEEAKRGMAVaGKVNVTPS...EE
  873-  931 (58.62/37.05)	KDLSSYEAVASntsgstpkelfEDVAEELEKQYHEDKARIKDAMKL.GKVTLASTltfEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.15|      15|      19|     197|     214|      12
---------------------------------------------------------------------------
  197-  214 (24.85/19.16)	FGSSPSLQYRPVvptQQG
  217-  231 (29.30/14.39)	FIQSASQQFQPV...GQG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21232 with Med35 domain of Kingdom Viridiplantae
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