<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21223

Description ATP-dependent DNA helicase Q-like 4A isoform X2
SequenceMSSMACRIQNIGRLPSAQVQKAWHALSNLQISHRNYTKPGKNVLVKDASSRYCCDIGRTATPSSCDIDMSRTHMQTHQYINGTNSRNSEAATCLGNRFPSSNVNVADVGNFFGGQSQVRASMVNNFDSRVPGGSFSNNSVHTSQIKHSAKVLVNDIDDDDEILENIDVDQIVEQYQSSCTPQQSISKLPPITPSIDKDNIARQEVTSLPPDLCSNCIHGFKIGLCPEAASHLQEMKDMLITISNELLDDVNDLSPMRIEKLRQDRLQLNKKIQQLERYLSNNSLDEERRKSHFSASTATPRPFQYETPQAAAFRTDTMRFDSQVQSHNVRGDYERCNSSSVSFSSVDGFGFSSCPVEREPYIPKFVEVNYIEGSNDNKWSSNNFPWTKKLEANNKKVFGNHSFRLNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGVTLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEIFRELNSEYCKYKLLYVTPEKVAKSDVLLRQLENLNARQMLARIVIDEAHCVSQWGHDFRPDYQALGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVIPKTKKCLDDIDKFIKENHYDESGIIYCLSRMDCEKVAERLQECGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGVIEQSPLASGYNRTNTANSGRVLETNTENLLRMVSYCENDVDCRRILQLIHLGEKFDCTTCKKTCDNCLKIKSFVEKDVTGIAKQLVELVKLTGQQFSSSHILEVYRGSFSQFVKKHRHQTVSLHGVGKHLAKGEASRVLRHLVTRTFLRRKSRKVNELKACELFSGRKTILIRFPSSVKASKQKNSEVISAKGSLTSGKQSPPHIGTEQPQSKANSDLSTKIFTSLKMLRTNLVRESADGVMAYHIFANTTLQNMSSRIPRTKEELLEINGIGKGKLAKYGDRILETIEAAIKEYYKTDKNSTSSNDSNDIKRKRDGNNGNENFDDDDFTKSTDRSKKRAPKRQNKTIEAYSYAEPDYPQLIDDELDLYG
Length1112
PositionUnknown
OrganismPrunus yedoensis var. nudiflora
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.07
Grand average of hydropathy-0.536
Instability index49.63
Isoelectric point8.73
Molecular weight125439.60
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21223
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     210.53|      53|     144|     829|     881|       1
---------------------------------------------------------------------------
  829-  881 (81.89/62.66)	ELVKLTGQQFSSSHIL.EVYRG......SFSQFVKKHRHQTVSLHGVGK.HLAKGEASRVL
  888-  943 (58.93/42.67)	TFLRRKSRKVNELKAC.ELFSGrktiliRFPSSVKASKQKNSEVISAKG.SLTSGKQS...
  974- 1027 (69.71/52.06)	NLVRESADGVMAYHIFaNTTLQ......NMSSRIPRTKEELLEINGIGKgKLAK.YGDRIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     273.34|      89|     126|     174|     272|       3
---------------------------------------------------------------------------
  174-  272 (132.12/135.82)	QYQsscTPQQSISKLPPI..TPSIDKDNIaRQEVTSLPPDLCS.NCIHGFKIGLCP.EAASHLQEMKDM.LITISNELLDDVNDLsPMrIEKLRQDrlqlNKKI
  304-  397 (141.23/108.27)	QYE...TPQAAAFRTDTMrfDSQVQSHNV.RGDYERCNSSSVSfSSVDGFGFSSCPvEREPYIPKFVEVnYIEGSNDNKWSSNNF.PW.TKKLEAN....NKKV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     225.42|      70|     655|      53|     129|       4
---------------------------------------------------------------------------
   53-  129 (115.85/98.58)	CCDIGRTATPSSCDIDMSRT.HMQTHQYINGTNSRNSEAATclG.NRfpssnVNVADVGNFFGGQSQVRASMV....NNFDSR
  710-  785 (109.57/74.47)	CGRAGRDGQRSSCVLYYSYSdYIRVKHMISQGVIEQSPLAS..GyNR.....TNTANSGRVLETNTENLLRMVsyceNDVDCR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21223 with Med34 domain of Kingdom Viridiplantae
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