<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21218

Description U-box domain-containing protein 52-like
SequenceMGLRGKPGKKEESVAVAVDKDKGSQHAIKWTVDNLLSRGQNLTLLHVKETASHHHHHHHHAGHGTEEAGKVYQSQADAQAKELFLPFRCYCTKKAIKCHEIIIEDTDISKALVNYVTTNLIETLVLGTPSKNGLFRFMTTDVPTTVSKKAPDFCTVYVIGRGKISIVRSATGSVPERASSPHHEIEHHSSKASESYPQMMMSNHKPRAPERTQFSARRHPNENEIMSPFSRGNSALNKSYELPPDSDISYASSGTPGRDHMFPSFYDSMSSGMTSRFSVNSDLDSRSSTSSASYSGTKFIDMSSLQHDFSSPLRNFSSPHHDFSSPQHDFSSCSFESGNSWSSSQNADDVDAEMRRLRLELKHTRDMYNTACKEGVAEKHKAKEVNRWKLEEELRLEEGRIVEEAALSLVGKEKAKYRAAMEAAEAAQRIAELETQKRRNVELKALREAEHRKTVLESNSYDLRYRKYTIEEIETATNSFSAGYKIGEGGYGPVYRGELDHTPVAIKVLRPDAAHGEEQFKKEVEVLSCIRHPNMVLLLGACPEFGCLVYEYMANGSLEDCLFRRGNTPVIPWQLRFRIAAEISTGLLFLHQTKPEPLVHRDLKPGNILLDHNYVSKISDVGLARLVPASVANSVTQYHMTSTAGTFCYIDPEYQQTGMLGVKSDVYSLGVLLLQIITARPPMGLTHLVEEAIDTGAFAEVLDPAVSDWPIEEALKFAKLSLQCAEMRRKDRPDLGKVLLPELNRLREFGQDSMNRLMFGGSQVFSEKQGAISTRQDVISDTNLTHSGYDSSRSQSSTPSNAGRRMLFSDLE
Length812
PositionTail
OrganismPrunus yedoensis var. nudiflora
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.07
Grand average of hydropathy-0.530
Instability index48.88
Isoelectric point6.60
Molecular weight90694.11
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21218
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.63|      20|      20|     100|     119|       1
---------------------------------------------------------------------------
  100-  119 (31.60/20.31)	EIIIEDTDISKALVNYVTTN
  122-  141 (34.03/22.38)	ETLVLGTPSKNGLFRFMTTD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.13|      15|     135|     175|     193|       2
---------------------------------------------------------------------------
  179-  193 (29.43/19.84)	SSPHHEI...EHHSSKAS
  317-  334 (25.70/ 7.43)	SSPHHDFsspQHDFSSCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.89|      36|      39|     220|     255|       3
---------------------------------------------------------------------------
  220-  255 (65.61/44.22)	PNENEIMSPF....SRG.NSALNKSYELPPDSDISYAS.SGT
  256-  297 (50.28/31.94)	PGRDHMFPSFydsmSSGmTSRFSVNSDLDSRSSTSSASySGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.25|      23|      32|     359|     383|       4
---------------------------------------------------------------------------
  359-  383 (35.38/23.13)	LELKHTRDMYNTACkeGVAEKHKAK
  394-  416 (33.87/16.82)	LRLEEGRIVEEAAL..SLVGKEKAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.08|      29|     297|     420|     448|       6
---------------------------------------------------------------------------
  420-  448 (45.49/31.22)	AMEAAEAAQRIAELETQKRRNV......ELKALRE
  714-  748 (40.59/27.10)	ALKFAKLSLQCAEMRRKDRPDLgkvllpELNRLRE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21218 with Med32 domain of Kingdom Viridiplantae
Unable to open file!