<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21213

Description U-box domain-containing protein 35 isoform X1
SequenceMASHLSCDDTVPPINATAVAVDKDNKNSNHAVRFAIDHLVAKNTNPYIILIHVRHKNHHAHRRGDGESGNHDGHHVFVPYRAYCARKEAQVKEVILDDHDVAKDLLEYVNNHYINSIVVGASTRNALTRKFKIGNDVPTSLVKLAPEFCSVYVISKGKMVGGRTAKRPVVNTATPPKQPSPQGLPPCTPTEQTEADNGARSRGQPAVRGGWKNAGGSEKIPVGERGRGVLQSISQWTLTFLIMVRQVDIISQGLDFSSASCSPKESSRQSARDIEAEMKRLKLELKQTMDMYSSACKEAISAKNKAKELNQWKQEEARKFEEARNAEEAALAIAEMEKAKCKAAIEAAEASQKVAEMEAQRRRQAEMKAKKEAQEKNRALNALAHNDVRYRKYTIEEIEQATQEFSASNKIGEGGYGPVYKGKLDHTPVAIKVLRPDAAQGRKQFQQEVEVLSCIRYPNMVLLLGACPEFGCLVYEYMDNGSLEDLLFRRGNTPPISWSRRFKIAAEISTTLLFLHQAKPEPLVHRDLKPANILIDRNYVSKISDVGLARLVPPSMADEVTQYHMTAAAGTFCYIDPEYQQSGMLTTKSDIYSLGIVLLQIITAKPAMGLSHHVRRSIEKGTFSEMLDPAVPDWPIELALAFAKLALQCAELRKKDRPDLGTVVVPELNRLRDFGRHGEGSHPGHFTTAHSHSSGLRPSELRSSTTSSQESMNKSTAADRVEAQT
Length725
PositionTail
OrganismPrunus yedoensis var. nudiflora
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.06
Grand average of hydropathy-0.496
Instability index48.93
Isoelectric point8.87
Molecular weight80335.47
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21213
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.89|      49|      72|     275|     326|       1
---------------------------------------------------------------------------
  275-  326 (74.04/59.75)	EAEMKRLKLELKQTMDMYSSACKEAiSAKNKAkeLNQWKQEEA..RKF..EEARNA
  349-  401 (70.85/46.68)	EASQKVAEMEAQRRRQAEMKAKKEA.QEKNRA..LNALAHNDVryRKYtiEEIEQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.30|      27|      63|      37|      63|       2
---------------------------------------------------------------------------
   37-   63 (51.35/38.30)	DHLVAKN.....TNPYIILIHVRHKNHHAHRR
   98-  129 (41.95/29.94)	DHDVAKDlleyvNNHYINSIVVGASTRNALTR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21213 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LRDFGRHGEGSHPGHFTTAHSHSSGLRPSELRSSTTSSQESMNKSTAADRVEAQT
2) TAKRPVVNTATPPKQPSPQGLPPCTPTEQTEADNGARSRGQPAVRGGWKNAGGSEKIPVGERG
671
164
725
226










Molecular Recognition Features






MoRF SequenceStartStop




NANANA