<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21210

Description Putative mediator of RNA polymerase II transcription subunit 26b
SequenceMTTKSGSLNYWRNYFRTANSDIFDIIDHAIMVAASDCPKEFKLRRDRIAERLFSCRLTRCSGCDKVELAVPGGDGEDDDDDRGCKSGFDRDGGEVEAGASKESKVNSSRDDQGEMNMNQLSNYSYGLAEALTAEIEEESEIVGEVLRIKEIFNNCEEESDTVLFESLRKLQLMALNVETLKATEIGKAVNGLRKHGSKKIRHLARSLIDGWKDMVDEWVNATTAIAGTEAMSDSVNPSFDDEEGLPSPPLDEGAFFATQTTSMELSQFFDGMDDFGNPRNNCDNGRKPSVEKQNIVKQKQQPSNEANVLPKENKNEQVKKQEVVKPNKLSNTDSGPGRPPKVNMEQKVNNETKIQQKTDEVAIQKRQLTAKRQRTVQVMELQDLPKQGLARRNPHVKPGNHNRHWAHGRR
Length410
PositionUnknown
OrganismPrunus yedoensis var. nudiflora
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.05
Grand average of hydropathy-0.896
Instability index44.40
Isoelectric point5.62
Molecular weight46030.84
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21210
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.92|      15|      18|      82|      96|       1
---------------------------------------------------------------------------
   82-   96 (28.16/15.37)	RGCKSGFDR.DGGEVE
  101-  116 (19.76/ 8.93)	KESKVNSSRdDQGEMN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.90|      14|      18|     134|     147|       2
---------------------------------------------------------------------------
  134-  147 (24.26/15.46)	EI....EEESE.IVGEVLR
  150-  168 (14.64/ 6.81)	EIfnncEEESDtVLFESLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.56|      27|      27|     292|     318|       3
---------------------------------------------------------------------------
  292-  318 (44.88/26.72)	KQNIVKQKQQPSNEANV..LPKENKNEQV
  320-  348 (41.68/24.35)	KQEVVKPNKLSNTDSGPgrPPKVNMEQKV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.46|      12|      15|     208|     220|       4
---------------------------------------------------------------------------
  208-  220 (19.39/20.18)	IDGWKDMVDEwVN
  225-  236 (21.06/13.83)	IAGTEAMSDS.VN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.21|      15|      29|     239|     253|       6
---------------------------------------------------------------------------
  239-  253 (29.24/18.29)	FD...............DEEGLPSPPLDEG
  256-  285 (20.96/11.03)	FAtqttsmelsqffdgmDDFGNPRNNCDNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.80|      12|      17|     366|     377|       7
---------------------------------------------------------------------------
  366-  377 (19.65/15.50)	RQLTAKRQRTVQ
  386-  397 (21.15/17.26)	KQGLARRNPHVK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21210 with Med26 domain of Kingdom Viridiplantae
Unable to open file!