<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21205

Description Putative mediator of rna polymerase ii transcription subunit 26c
SequenceMDLDEFRLILSESKVDVWTMIDAAISVASVDCGDELKHRRDGIVEKLYSTRCRSCNDVVNGQYSLDNGQTVTRNVETVMNKSPLTPESNHRNNNTSNDNKNDDEEEDVDPYGGLFDDDEQTRILTIKEQLEDPQLSDEDVIDLLQSLADMDITFQALKETDIGRHVNRLRKHPSNEVRRLVKMLVRKWKETVDDWVRLNQPEQHGSSNLIAADGDSPQQNVPKNHLNGHHQVPDFTYSPNPRNGSSSSDRNNSESEYKPKPVPPRNVTPTRPLQSAPKPTSAPPPSRPPPRESAIDLEKLNSARRRLQENYQEAQNAKKQRTIQVMDIHEIPKPKNGFFAKNKGGFQGRHHR
Length352
PositionUnknown
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.05
Grand average of hydropathy-1.086
Instability index51.06
Isoelectric point5.92
Molecular weight40075.87
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21205
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.07|      14|      15|     215|     228|       1
---------------------------------------------------------------------------
  199-  212 (22.12/12.27)	NQPEQHGSSNLIAA
  215-  228 (24.48/14.41)	DSPQQNVPKNHLNG
  231-  244 (25.47/15.31)	QVPDFTYSPNPRNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.57|      11|      17|     258|     272|       2
---------------------------------------------------------------------------
  258-  272 (19.47/15.56)	KPKPVPPrnvtPTRP
  278-  288 (24.10/10.13)	KPTSAPP....PSRP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21205 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QTVTRNVETVMNKSPLTPESNHRNNNTSNDNKNDDEEEDVDPYGGL
2) VDDWVRLNQPEQHGSSNLIAADGDSPQQNVPKNHLNGHHQVPDFTYSPNPRNGSSSSDRNNSESEYKPKPVPPRNVTPTRPLQSAPKPTSAPPPSRPPPRESAIDLEKLNSARRRLQENYQEAQNAKKQRTIQVMDIHEIPKPKNGFFAKNKGGFQGRHHR
69
192
114
352










Molecular Recognition Features






MoRF SequenceStartStop




1) FFAKNKGGFQGRHHR
338
352