<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21201

Description U-box domain-containing protein 35
SequenceMASSDDGGSHHRPIVVAVDKDKNSASAVKWAVDNLLTTNPNLVLLHVRIKKSPNPGGGNEAAPDANGGSCDEDTQNVFTPFRAYSARKRVVVKEIALEDTEVSKGLVDYINGHCVTNIVLGASSRSAFGRKYWTPDVPTIINKAAPEFCTVYVVSKGRQQSVRPAAKPLTSSAPARQHSSSAWTPSRLSNSESEDISRLSFARAEPKIIESEKTRPEKGPSNVVMDHLHAPSGGPMNSCSRTSLSDGSDLFARINHRSVDISADNLDFTQVAIKETPRNGSSSYTLEAEMKRLKLELRQTLDMYNAACKEAVLANQAAEELNKWKMEEARRFEQARLAEEAALAIAETEKAKCRAAIEAAKKAQKMAEIEAQRRKYAELKAKLEGEKKNRAMNVLSQNDLRYRKYTIEEIEAATKNFSSSLKVGEGGYGPVFKAKLDHTPVAIKVLSADAAQGKKQFQQEVEVLSLIRHPNLVLLLGACPEYGCLVYEFMNNGSLEDRLFRKGNTPSIPWEIRFKIAAEIATGLLFLHQAKPEPLVHRDLKPANILLDRNYVCKISDVGLARLVPPSVADTVTQYHMTSAAGTFCYIDPEYQQTGKLGTKSDVYSLGIMLLQIITARPPMGLTHHVERAIEKGTFADLLDPTVQNWPVEEALKFAKLSLKCAELRMKDRPDLGSVIVPELNKLKEVGINSMPGISS
Length696
PositionTail
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.381
Instability index38.35
Isoelectric point8.70
Molecular weight76561.52
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21201
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.17|      10|      49|     126|     135|       1
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  126-  135 (22.30/12.33)	SAFGRKY....WTP
  172-  185 (16.86/ 7.83)	SAPARQHsssaWTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.97|      21|      49|     391|     411|       2
---------------------------------------------------------------------------
  391-  411 (35.45/25.25)	AMNVLSQNDLRYRKYTIEEIE
  442-  462 (33.52/23.49)	AIKVLSADAAQGKKQFQQEVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.17|      25|      50|     472|     498|       3
---------------------------------------------------------------------------
  472-  498 (41.10/29.30)	LVLLLGACPEygCLVY.EFMNNGSLEDR
  524-  549 (40.07/21.83)	LLFLHQAKPE..PLVHrDLKPANILLDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.96|      14|      51|     186|     203|       4
---------------------------------------------------------------------------
  186-  203 (19.55/21.44)	SRLSNSESEDIsrlsFAR
  240-  253 (25.40/15.70)	SRTSLSDGSDL....FAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.08|      26|      41|     316|     343|       5
---------------------------------------------------------------------------
  316-  343 (38.81/33.01)	QAAEELNKWKMEEARRFEQARLaeEAAL
  358-  383 (41.27/28.32)	EAAKKAQKMAEIEAQRRKYAEL..KAKL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21201 with Med32 domain of Kingdom Viridiplantae
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