<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21200

Description U-box domain-containing protein 35
SequenceMPLSFVSDDGCHPTIVAIDKDKHSASAVKWAVDHLVISNLTLVLVHVRIKNSTNQNGIVQGSNRGLSDQDTHKVFTPFRAYSARKGIAVKEVVIEDIEVSKGLLDYINSHRVTNIVLGASSRSALSRKFWSHDVPTIINKSAPDFCTVYVISKGKQQSVRPAAKPFVSSLSATLPSSQPWSAARLSTYSESSDVSRSIYSRPEQNIVGSEMMKPKIGPSNASMGNLDIHTREPKNSCSRSSPSDDRGLFAPLSHGSVDITTQNLDFTQVSVKDNCSSSYSWEAEMNRLKLELRQTLDMYNTACKEAVSANQAAKELHQWKMEESSRFKQARISEEAALAIAEMEKAKGRAAIEAAQKAQKLAETEAKRRKYAELKAKRETEEKNLALNDLSRSDLCYRKYTIEEIEAATKNFSNSEKIGEGGYGPVYKAKLDHTPVAIKVLRSDAAQGMKQFKQEVQVLGLMRHPNMVLLLGACPEYGCLVYEFMNNGSLEDRLFRKGNTPPIPWEIRFKIAAEIATGLLFLHQAKPEPLVHRDLKPANILLDSNYSCKISDVGLARLVPPSVADCVTQYHMTSAAGTFCYIDPEYQQTGKLGTKSDIYSLGVMLLQIITARPPMGLTHHVERAIENGTFADILDPTVPNWPMEETLNYAKLSLKCAELRKKDRPDLGSVILPELNKLKELGMNSKPSTCISVNPV
Length696
PositionTail
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.366
Instability index40.64
Isoelectric point8.71
Molecular weight77059.20
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21200
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     119.00|      27|      36|     217|     243|       1
---------------------------------------------------------------------------
  175-  203 (30.11/15.48)	.PSSQPWSAARLSTYSESSDVSRsiySRPE
  217-  243 (49.02/29.45)	GPSNASMGNLDIHTREPKNSCSR...SSPS
  255-  280 (39.87/22.69)	GSVDITTQNLDFTQVSVKDNCS....SSYS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.89|      39|      55|      26|      64|       2
---------------------------------------------------------------------------
   26-   64 (65.73/50.38)	SAVK.WAVDHLVISNLTLVLVHVRIKNSTNQNGIVQG.SNR
   82-  122 (54.16/40.19)	SARKgIAVKEVVIEDIEVSKGLLDYINSHRVTNIVLGaSSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.54|      38|      69|     327|     364|       3
---------------------------------------------------------------------------
  283-  317 (15.99/ 6.82)	..............AEMNRLKlelrqtldmyntaCKEAVSANQA....AKEL..H
  327-  364 (59.78/47.53)	FKQARISEEAALAIAEMEKAK.............GRAAIEAAQK....AQKLAET
  374-  420 (38.76/27.99)	LKAKRETEEKNLALNDLSRSD.......lcyrkyTIEEIEAATKnfsnSEKIGE.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21200 with Med32 domain of Kingdom Viridiplantae
Unable to open file!