<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21199

Description Luminal-binding protein 5
SequenceMGGGYWRRSSSLVVLAIVLFGCLSALSIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVGFTDGERLIGEAAKNQAAVNPERTIFDVKRLIGRKFEDKEVQRDMKLVPYKIVNKDGKPYIQVKIKDGEVKVFSPEEISAMILIKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSVLTIDNGVFEVLSTNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVTISVYEGERSLTKDCRLLGNFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNGLETYVYNMKNQINDKDKLADKLESDEKEKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGASGGSSAEEEDGHDEL
Length666
PositionUnknown
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.448
Instability index28.83
Isoelectric point5.11
Molecular weight73353.22
Publications









Function






Annotated function

Probably plays a role in facilitating the assembly of
multimeric protein complexes inside the ER.



GO - Cellular Component
endoplasmic reticulum lumen	GO:0005788	IEA:UniProtKB-SubCell

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21199
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.01|      25|      27|     564|     588|       1
---------------------------------------------------------------------------
  564-  588 (41.18/23.13)	KVKERI..DARNGLETYVYNMKNQIND
  591-  617 (33.12/17.39)	KLADKLesDEKEKIETAVKEALEWLDD
  629-  646 (22.71/ 9.97)	KLKEVE..AVCNPIITAVYQ.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      52.21|      12|      31|     139|     150|       3
---------------------------------------------------------------------------
  139-  150 (20.58/12.79)	KIKDGEVKVFSP
  160-  171 (15.82/ 8.02)	KMKETAEAFLGK
  172-  181 (15.81/ 8.01)	KIKDAVVTV..P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.90|      29|     260|     231|     259|       4
---------------------------------------------------------------------------
  231-  259 (52.92/33.15)	FDLGG......GTFDVSV.LTID.NGVFEVLSTNGDT
  492-  528 (35.98/20.14)	FDLTGippaprGTPQIEVtFEVDaNGILNVKAEDKGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.28|      18|      21|      39|      57|       5
---------------------------------------------------------------------------
   39-   57 (30.28/23.32)	VIGIDLGT..TYSCVGvYKNG
   61-   80 (31.00/19.03)	IIANDQGNriTPSWVG.FTDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.38|      14|      28|     350|     363|       8
---------------------------------------------------------------------------
  350-  363 (23.16/12.60)	VKKAMED..AGLEKNQ
  379-  394 (19.23/ 9.30)	VQQLLKDyfDGKEPNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.54|      15|     430|      99|     118|       9
---------------------------------------------------------------------------
   81-   98 (18.56/17.43)	ERLIGEAAKNQAAvnpER
  104-  118 (24.98/ 9.68)	KRLIGRKFEDKEV...QR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21199 with Med37 domain of Kingdom Viridiplantae
Unable to open file!