<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21187

Description Heat shock cognate 70 kDa protein 2
SequenceMAGKCEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFNDPSVQSDMKLWPFKVIPGPADKPMIVVNYKGEEKQFSAEEISSMVLVKMKEIAEAFLGTTIKNAVVTVPAYFNDSQRQATKDAGTISGLNVMRIINEPTAAAIAYGLDKKAGSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSGVHEIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDMLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMGNTIKDEKIGSKLSPDDKKKIEDAIDQAISWLEGNQLAEADEFEDKMKELESICNPIIAKMYQGGGAGPDMTGGMDEDGPSAGASGAGPKIEEVD
Length650
PositionUnknown
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.437
Instability index33.27
Isoelectric point5.11
Molecular weight71209.90
Publications









Function






Annotated function

Probably plays a role in facilitating the assembly of
multimeric protein complexes inside the ER.



GO - Cellular Component
endoplasmic reticulum lumen	GO:0005788	IEA:UniProtKB-SubCell

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21187
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.10|      50|      74|     412|     466|       1
---------------------------------------------------------------------------
  412-  466 (75.00/61.77)	AGGVMTVLIPRNTTipTKKEQVFSTysdNQPGVLIQ......VYEGERARTRDNNLLGKFE
  488-  543 (75.11/47.05)	ANGILNVSAEDKTT..GQKNKITIT...NDKGRLSKeeiekmVQEAEKYKAEDEEHKKKVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.27|      18|      21|      38|      55|       3
---------------------------------------------------------------------------
   16-   33 (19.08/10.22)	....TTYSCVGVWQHDRveIIA
   38-   55 (32.67/22.54)	NR..TTPSYVAFTDTER..LIG
   60-   78 (24.52/15.16)	NQvaMNPTNTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.54|      65|     282|     274|     345|       4
---------------------------------------------------------------------------
  274-  345 (95.56/72.79)	ERAKRTLSSTAQTTIEiDSLYEGIDFY..TTITRA.RFEELNMDLFRKCmEPVekclrDAKMDKSGVHEIVLVGG
  562-  629 (103.97/59.95)	EKIGSKLSPDDKKKIE.DAIDQAISWLegNQLAEAdEFEDKMKELESIC.NPI.....IAKMYQGGGAGPDMTGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21187 with Med37 domain of Kingdom Viridiplantae
Unable to open file!