<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21185

Description U-box domain-containing protein 34
SequenceMWPPPTAGNHGPPLNKLIAVAIDKDRGSQVALKWAIDNLLARGQTVILIHVKVKPSASQPPSHATSRLNQMSDASNDGSGMIELDPQLKELFLPFRVFCTRKDIQCHDVVLEDVDVVKAIVEYVNRTAIEVLILGAAAKGGLLRRFKVKDIPGNVVKGVPDFCTVYVISKNGKISATRSASRLAPFIHPLRHQFMQQGNAKSNTVEDSLNTPSRGSLSGIPKPVSDLPMSNLQSDTLNMKSPFTHRKGPNGKPYEISQPDTDISFVSSGRPSIDNMFPSFADNYDSGATPPRLSGFSDFEAQNFEPIPLGRRSLDIMPSELSFLSMEGDRASFSSTPDDVAAEMRRLKLELKQTMEMYSTACKEALTAQQKAMELQRWKTEEQRRLEEARFAEEAALALAEKEKAKSRAALEHAEAAQRLAELEAQKRINAEMKALKEAEERNKVLNKLSNSDFRYRRYSIEEIETATDYFAQANKIGEGGYGPVYKCYMDHTPVAVKVLRPDAAHGRQQFQQEVEVLSCIRHPHMVLLLGACPEYGCLVYEFMSNGSLEDRLFQRGKTPPLSWQQRFRIAAEIGAGLLFLHQSKPEPIVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDVYSLGIIFLQILTAKSPMGLTHHVERAIEKGTFNEMLDSSVPDWPLDEALNLAKLSLKCSELRRKDRPDLSKVIMPELERLRTLGEENPCQSALYSSGYSTNHSQASVSQASQHE
Length771
PositionTail
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-0.399
Instability index44.52
Isoelectric point7.02
Molecular weight85815.91
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21185
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.40|      13|     364|     334|     350|       1
---------------------------------------------------------------------------
  315-  327 (22.55/13.14)	DIMPSELSFLSME
  338-  350 (20.85/ 6.08)	DDVAAEMRRLKLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.65|      19|     364|     123|     141|       2
---------------------------------------------------------------------------
  123-  141 (30.92/21.42)	YVNRTAIEVLILGAAAKGG
  489-  507 (33.09/23.47)	YMDHTPVAVKVLRPDAAHG
  522-  537 (25.64/16.41)	...RHPHMVLLLGACPEYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.38|      24|     432|     237|     260|       4
---------------------------------------------------------------------------
  237-  260 (47.73/28.94)	LNMKSP..FTH......RKGPNGKPYEISQPD
  668-  699 (32.65/17.69)	LTAKSPmgLTHhveraiEKGTFNEMLDSSVPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.02|      21|      92|     641|     661|       5
---------------------------------------------------------------------------
  641-  661 (39.06/27.30)	IDPEYQQTGMLG....IKSDVYSLG
  730-  754 (32.96/21.90)	IMPELERLRTLGeenpCQSALYSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.46|      14|      18|     394|     408|       7
---------------------------------------------------------------------------
  394-  408 (18.53/16.43)	EAALALAEKEkAKSR
  415-  428 (23.93/15.87)	EAAQRLAELE.AQKR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21185 with Med32 domain of Kingdom Viridiplantae
Unable to open file!