<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21173

Description U-box domain-containing protein 35
SequenceMVKSGSSRDDTTIAVAIDRDKNSQHAVRWAVDNLNIKNGQIILIHVHVQENLHSHSHSMISKEGHSPTLAEMNQFFLPYRGICARKGIQAKEVILQDDDVAHALAEYITQTFITTIVVGASTRNALARAFKNQDVPSSLTRSVPEFCSIYAISRGKVLKLKSASQPPTPSSKASSGQSSQTGSTQDSPVSQALTAHGSWRSTGSSEFIGAGSQSISFDSSSASDRLPVSRNASPNYSSASEGTPKALSDNQHSSTTPSPIYQSVNNINDLIKKTQLVRQPGSKNLTPAQSLEHSGEMDEGTPQPELPGSSENSSQNSTMDFIQILNDRHLGNLIPSAQHPVNNLNLRIHTKENSSYSTSGSSNLSGSSNFQSSDMSFEHLDSCHISDASRCSISSQNAVELEEEMKRLKLELKQTLDMYNETCRRQAREIDHLKSEEACKLEEAKEAQVAAHAMVEKEKQKCKAALEVARMAQQIAELESEKRKRVEQKFLHEEEEKKKAQDAFGRSTIPYRRYSIDEIEAATNYFSNSKKIGEGGYGPVYKAYLDHTAVAIKVLRSDMSQGQMQFQQELDVLNRLRHPNVVLLLGACPEYGCLVYEYMENGSLEDRLFCKNKSPPIPWPARFRIAAEIAAALHFFHRSRPEPIVHRDLKPANILLDTNYKSKISDVGLARLVPASVSDSVTQYIMTSAAGTFCYIDPEYQQTGMLNTKSDIYSLGIMLLQIITARPPMGLTHHVERSIEKGNFDDILDPSVNDWPLEEALSFAKLALKCCELRRKDRPDLGSDILPELERLKDFALDYRRRGRFT
Length806
PositionTail
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.540
Instability index51.77
Isoelectric point6.53
Molecular weight89578.64
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21173
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.08|      40|      51|     659|     698|       1
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  659-  698 (70.47/47.09)	NYKSKISDVG..LARLVPASVSDSVTQYIMTS.AAGTFCYI.DP
  707-  750 (58.60/37.96)	NTKSDIYSLGimLLQIITARPPMGLTHHVERSiEKGNFDDIlDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.92|      48|      55|     378|     432|       2
---------------------------------------------------------------------------
  378-  425 (79.65/58.76)	EHLDSCHISDASRCSISSQNAVELEEEMKRLKLEL....KQTLDMYNETCRR
  434-  485 (68.27/36.71)	KSEEACKLEEAKEAQVAAHAMVEKEKQKCKAALEVarmaQQIAELESEKRKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     282.74|      57|      57|     202|     258|       3
---------------------------------------------------------------------------
  123-  184 (70.39/39.63)	RNA.LARAFKNQDVPS...sltRSVPEFcsIYAISRGKVLKLKSASQPPTPSSKASSGQS.....SQTGST
  188-  243 (77.76/44.59)	PVS.QALTAHGS...W....rsTGSSEF..IGAGSQSISFDSSSASDRLPVSRNASPNYS.....SASEGT
  244-  301 (67.41/37.63)	PKA.LSDNQHSSTTPS....piYQSVNN..INDLIKKTQL......VRQPGSKNLTPAQSlehsgEMDEGT
  302-  363 (67.18/37.47)	PQPeLPGSSENSSQNStmdfiqILNDRH..LGNLIPSAQHPVNNLNLRIHTKENSS..YS.....TSGSSN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21173 with Med32 domain of Kingdom Viridiplantae
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