<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21169

Description Uncharacterized protein
SequenceMSQQRMNYPSSGGTSQNVTNIDNIEVVRSRMIQVNDAQSEFLTNLSASEDPTSVNWITFLNKINTFLSKHTGLSNTFIESSLRKIMLYPKEAPPVELEQIFNTLLRTKQIPEIENLDQEIKQEIAIQENLLNLELEVKKNSNDIDDDNKWDKLFEEWDKRYKEHDYIASQSSTICENILGDNNNLKKRLEDSIDLDKELRDDVENIEDLTMEKVLAFMSSGIQEGKGPSPLR
Length232
PositionHead
OrganismRhizophagus clarus
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Glomeromycotina> Glomeromycetes> Glomerales> Glomeraceae> Rhizophagus.
Aromaticity0.06
Grand average of hydropathy-0.709
Instability index66.41
Isoelectric point4.60
Molecular weight26742.60
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21169
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.97|      45|      46|     129|     174|       1
---------------------------------------------------------------------------
  129-  174 (73.68/45.44)	NLLNLELEVKKNSND.IDDDNKWDKLFEEWDKRYKEHdYIASQSSTI
  177-  222 (69.29/38.49)	NILGDNNNLKKRLEDsIDLDKELRDDVENIEDLTMEK.VLAFMSSGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.74|      14|      16|      86|      99|       2
---------------------------------------------------------------------------
   86-   99 (26.19/17.23)	MLYPKEAPPVE.LEQ
  104-  118 (19.55/11.35)	LLRTKQIPEIEnLDQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21169 with Med8 domain of Kingdom Fungi
Unable to open file!