<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21150

Description Uncharacterized protein
SequenceMKYNQSNGVINSPAIPSISIMFFVYNLVQTRPVMTDDMAVEYLEKLQHIQVSCDHEFYVELWMSALTGLAEECDKTSTDRAQHTLLWKSFVLVKLPSLIEKLELKKSNKLNSEENKYYCHECVINQLFGFKGLINACNPLVENDIFRPEDITIDILRVCLNRKLVRKEFVNRFIELEYEIDVGDTGLTAGAILDDPSRQIIDHLVSTATTSFLHQESRVETIFKLMSEWSTKLEVTPLATLCRSLMDVPTLLDIIHLYRHPSEFISPLERLCNTWTSKTDSKESLLRDYENFGTIFLFLISVIDRYEFHKNIKDVLHDEEGFCYKWLIQSGSTYDIDSLDHEKSIITRWVSALSDASQEIPEDLIRNNPRILIELSPTIFKEALKKVATEDIEIAMISLEPLFTHFIKLHMSYALIGVCQSLCDDILFKGKSSISFKVLNRLILEEAFPNSIIKLIGNKLLSIFDIISENGSLPSIEDTESALRNKIAKSMMIPNWINTKHPAEKLYYRFKIMFKTIVYGGRHKPSLIYEISLSENYLNNDIDTEYEYITGNGGTANNLFDEFTTNPSSWLGPHHLDIELFKNCLEINGPRTFVDLIVEEVLSAGKKGMGIRAAELGASLLTLPIYYTWNEYLHPSTLMKIFFMDFLPSILEKKIDMYTQSYSIGIMTLFILMMLKKDTQSVGGVDVSIDEIVGINNSVDDGTNDILMIDAIMPEEKGGGMEGVGGTKVEIEHFIKCVLSIFKQDTDGDNVDSKVVQNGSKLIDDKVKNESELKLINGPAKGFIDALLIHEDIIPELKSLIKK
Length803
PositionTail
OrganismRhizophagus clarus
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Glomeromycotina> Glomeromycetes> Glomerales> Glomeraceae> Rhizophagus.
Aromaticity0.09
Grand average of hydropathy-0.064
Instability index37.91
Isoelectric point5.06
Molecular weight91380.33
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21150
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.18|      13|      23|     314|     326|       2
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  314-  326 (26.47/18.26)	DVLHDEEGFCYKW
  337-  349 (23.70/15.55)	DSLDHEKSIITRW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.34|      46|     136|     394|     462|       3
---------------------------------------------------------------------------
  417-  462 (76.22/85.80)	GVCQSLCDDILFKGKSSISFKVLN....RLILEEAFPNSIIKLIGNKLLS
  554-  603 (76.13/41.44)	GTANNLFDEFTTNPSSWLGPHHLDielfKNCLEINGPRTFVDLIVEEVLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.83|      13|      26|     372|     385|       4
---------------------------------------------------------------------------
  372-  385 (17.00/15.93)	LIELSPtIFKEALK
  396-  408 (23.83/16.71)	MISLEP.LFTHFIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.81|      15|      26|      61|      75|       5
---------------------------------------------------------------------------
   61-   75 (27.66/18.04)	LWMS.ALTGLAEECDK
   86-  101 (21.16/12.16)	LWKSfVLVKLPSLIEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.07|      24|      27|     219|     242|       6
---------------------------------------------------------------------------
  219-  242 (41.39/24.41)	VETIFKLMSEWSTKLE.VTPLATLC
  248-  272 (38.67/22.37)	VPTLLDIIHLYRHPSEfISPLERLC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21150 with Med5 domain of Kingdom Fungi
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