<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21090

Description prostate tumor-overexpressed gene 1 protein isoform X1
SequenceMVRPRRAPHRSGAGGPLGGRGRPLRHLTVRAARSRSWPASPRGPQPPRIRARSAPPMQGARVFGALGPIGPSSPGLALGGLAVGEHRLSNKLLAWSGVLEWQEKRRPYSDSTAKLKRALPCQAYVNQGENLETDQWPQKLIMQLIPQQLLTTLGPLFRNSQLAQFHFTNRDCDSLKGLCRVMGNGFAGCMLFPHISPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNAIRQVITTRKQAVGPGGVAGPVQMVNNKFLAWSGVMEWQEVSPGRAWVTSGPGHPPTPDGSPLLIPQKPRPEPNSRSKRWLPSHIYVNQGEILRTEQWPRKLYMQLIPQQLLTTLVPLFRNSRLVQFHFTKDLETLKSLCRIMDNGFAGCVHFSYKASCEIRVLMLLYSSEKKIFIGLIPHDQSNFVNGIRRVIANQQQVLQRNLEQEQQQRGMGG
Length443
PositionUnknown
OrganismDelphinapterus leucas (Beluga whale)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Artiodactyla> Whippomorpha> Cetacea> Odontoceti> Monodontidae> Delphinapterus.
Aromaticity0.07
Grand average of hydropathy-0.354
Instability index51.28
Isoelectric point10.68
Molecular weight49557.07
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21090
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.24|       9|      38|     177|     186|       1
---------------------------------------------------------------------------
  178-  186 (20.61/16.16)	LCRVMGNGF
  366-  374 (20.62/ 9.39)	LCRIMDNGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     475.02|     124|     186|     105|     238|       2
---------------------------------------------------------------------------
  105-  238 (235.82/120.85)	RRPYSDSTAKLKRALPCQAYVNQGENLETDQWPQKLIMQLIPQQLLTTLGPLFRNSQLAQFHFTnRDCDSLKGlcrvmgngfAGCMLFPHISPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNAIRQVITTRKQ
  294-  426 (239.20/119.31)	QKPRPEPNSRSKRWLPSHIYVNQGEILRTEQWPRKLYMQLIPQQLLTTLVPLFRNSRLVQFHFT.KDLETLKSlcrimdngfAGCVHFSYKASCEIRVLMLLYSSEKKIFIGLIPHDQSNFVNGIRRVIANQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.85|      25|     162|      79|     103|       3
---------------------------------------------------------------------------
   79-  103 (49.10/36.17)	GGLAVGEHRLSNKLLAWSGVLEWQE
  243-  267 (51.75/38.53)	GGVAGPVQMVNNKFLAWSGVMEWQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.26|      21|      27|       8|      33|       4
---------------------------------------------------------------------------
    2-   23 (39.12/10.77)	VRPRR...aPHRSGAGGPLGGRGRP
   29-   51 (27.99/12.96)	VRAARsrswPASPR..GPQPPRIRA
  268-  289 (37.15/ 9.73)	VSPGR...aWVTSGPGHPPTPDGSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21090 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MVRPRRAPHRSGAGGPLGGRGRPLRHLTVRAARSRSWPASPRGPQPPRIRARSAPPM
1
57










Molecular Recognition Features






MoRF SequenceStartStop




1) RGRPLRHLTVRAARSRSW
2) RRAPHRS
20
5
37
11