<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21041

Description F-box-like/WD repeat-containing protein TBL1X isoform X3
SequenceMPDVVQTRQQAFREKLAQQQASVAATAAAAAPAAPAAPAAVSQQNPPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKHLASGSFDKCVHIWNTQSGSLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length436
PositionTail
OrganismDelphinapterus leucas (Beluga whale)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Artiodactyla> Whippomorpha> Cetacea> Odontoceti> Monodontidae> Delphinapterus.
Aromaticity0.07
Grand average of hydropathy-0.379
Instability index34.02
Isoelectric point5.92
Molecular weight47034.91
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21041
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     375.55|      40|      40|     244|     283|       1
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   81-  116 (36.08/18.82)	..........PNKatVLRGHESE...........VFICAWNPVS.........dlLASGS.GDSTAR
  135-  172 (43.30/24.14)	HCirEGGHDVP....S....NKD...........VTSLDWNSDG.........tlLATGS.YDGFAR
  173-  202 (30.23/14.51)	I...WTEDGNLAS..TLGQHKGP...........IFALKWNKKG..........nY...........
  203-  254 (44.42/24.97)	IL..SAGVDKTTI..IWDAHTGEakqqfpfhsapALDVDWQNNT..........tFASCS.TDMCIH
  255-  296 (63.56/39.07)	VC..RLGCDRPVK..TFQGHTNE...........VNAIKWDPSG.........mlLASCS.DDMTLK
  297-  347 (58.45/35.31)	IW..SMKQDTCVH..DLQAHSKE...........IYTIKWSPTGpatsnpnsnimLASAS.FDSTVR
  351-  389 (53.89/31.95)	VE..RGVC...IH..TLTKHQEP...........VYSVAFSPDG.........khLASGS.FDKCVH
  390-  431 (45.62/25.85)	IW..NTQSGSLVH..SYRG.TGG...........IFEVCWNARG........dkvGASASdGSVCV.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21041 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MPDVVQTRQQAFREKLAQQQASVAATAAAAAPAAPAAPAAVSQQNPPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKAT
1
85










Molecular Recognition Features






MoRF SequenceStartStop




1) VAATAAAAAPAAPAAPA
23
39