Description | Mediator of RNA polymerase II transcription subunit 1 |
Sequence | MKAQGETEESEKLSKMSSLLERLHAKFNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVSCLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQLCDVKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSLEQDLSKMAVMYWKATNAGPLDKILHGSVGYLTPRSGGHLMNLKYYASPSDLLDDKTTSPIILHENNVPRSLGMNASVTIEGTSAMYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLPACFFLKFPQPIPVSRAFVQKLQNCTGIPLFETQPTYVPLYELITQFELSKDPDPIPLNHNMRFYAALPGQQHCYFLNKDAPLPDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTLIGSCVKRTILKEDSPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLYKGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNLPPASSPGYGMTTGNNPMSGTTTPTNTFPGGPITTLFNMSMSIKDRHESVGHGEDFSKVSQNPILTSLLQITGNGGSTIGSSPTPPHHTPPPVSSMAGNTKNHPMLMNLLKDNPAQDFSTLYGSSPLERQNSSSGSPRMEMCSGSNKAKKKKSSRLPPDKPKHQTEDDFQRELFSMDVDSQNPIFDVNMTADTLDTPHITPAPSQCSTPPTTYPQPVPHPQSSIQRMVRLSSSDSIGPDVTDILSDIAEEASKLPSTSDDCPPIGTPVRDSSSSGHSQSALFDPDVFQANNNENPYTDPADLIADAAGSPSSDSPTNHFFPDGVDFNPDLLNSQSQSGFGEEYFDESSQSGDNDDFKGFTSQALNTLGVPMLGGDNGETKFKGNSQADTVDFSIIAVAGKALGPTDLMEHHSGSQSPLLTTGDLGKEKTQKRVKEGNGTSNSSLSGPGLDSKPGKRSRTPSNDGKSKDKPPKRKKADTEGKSPSHSSSNRPFTPPTSTGGSKSPGSSGRSQTPPGVATPPIPKITIQIPKGTVMVGKPSSHSQYTSSGSVSSSGSKSHYSHSSSSSASNSGKMKSSKSEGSSSSKLSSSIYSSQGSSGSSQSKNSSQSGGKPGSSPITKHGLSSGSSSTKMKPQGKPSSLMNPSLSKPNISPSHSRPPGGSDKLASPMKPVPVTPPSSKAKSPISSGSGGSHMSGTSSSTGIKSSSGLGSSGSLSQKTPPSSNSCTASSSSFSSSGSSMSSSQNQHGSSKGKSPSRNKKPSLTAVIDKLKHGVVTSGPGGEDPMDGQVGVSTNSSSHPVSSKHNMSGGEFQGKREKSDKDKSKVSTLGGSVDSSKKTSESKNVGSTGVAKIIISKHDGGSPSIKAKVTLQKPGESSGEGLRPQMASSKNYGSPLISGSTPKHERGSPSHSKSPAYTPQNLDSESESGSSIAEKSYQNSPSSDDGIRPLPEYSTEKHKKHKKEKKKVKDKDRDRDRDKDRDKKKSHSIKPESWSKSPISSDQSLSMTSNTILSTDRPSRLSPDFMIGEEDDDLMDVALIGN |
Length | 1579 |
Position | Middle |
Organism | Delphinapterus leucas (Beluga whale) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Artiodactyla> Whippomorpha> Cetacea> Odontoceti> Monodontidae> Delphinapterus. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.673 |
Instability index | 53.84 |
Isoelectric point | 8.88 |
Molecular weight | 168320.06 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364059 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP21037 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 221.15| 45| 50| 1330| 1374| 3 --------------------------------------------------------------------------- 614- 660 (41.61/ 8.29) G.GS.TI.GS....SP....TP...P.....H......HTPPPvSSM.A.GNTKnhpmlmnllKD..NPAQDFSTL 1038- 1092 (38.72/ 7.16) G.GSKSP.GS....SGRSQ.TP...PgVATPPipkitiQIPKG.TVMvG.KPSS.........HSqyTSSGSVSSS 1211- 1247 (45.75/ 9.89) P.VTPPS.SK.........aKS...P.ISSG.........SGG.SHM.S.GTSS.........ST..GIKSS.SGL 1316- 1366 (58.09/14.68) GpGGEDPmDGqvgvSTNSS.SH...P.VSSKH......NMSGG.EFQ.G.KREK.........SD..KDKSKVSTL 1460- 1508 (36.97/ 6.49) D.SESES.GS....SIAEK.SYqnsP.SSDDG......IRPLP.EYS.TeKHKK.........HK..KEKKKVKDK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 146.19| 41| 50| 324| 373| 5 --------------------------------------------------------------------------- 272- 321 (49.01/17.79) ......PLiMGSHPVdnkWTPSFSSITSansvdlpacFFL.KFPQPIPVSRA....FVQKL 322- 367 (69.04/33.04) QnctgiPL.FETQPT...YVPLYELITQ.........FELSKDPDPIPLNHNMR..FYAAL 371- 396 (28.14/18.11) Q..................................hcYFLNKDA.PLPDGRSLQgtLVSKI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 314.86| 55| 151| 1248| 1302| 6 --------------------------------------------------------------------------- 1122- 1157 (49.34/12.32) ................SSKLSSSIYSSQG.SS..GSSQSKNSSQSGGKP..GSSP.IT 1160- 1209 (71.18/21.48) GlSSGSSSTKMKPQGKPSSLMNPSLSKPN.ISP.SHSRPPGGSDKLASPMKP...... 1248- 1302 (95.60/31.72) G.SSGSLSQKTPPSSNSCTASSSSFSSSG.SSM.SSSQNQHGSSKGKSPSRNKKPSLT 1367- 1412 (49.08/12.21) G.GSVDSSKKTSESKN........VGSTGvAKI.IISKHDGGSPSIKAKVTLQKPG.. 1417- 1455 (49.67/12.46) ........EGLRPQ....MASSKNY...G.SPLiSGSTPKH..ERG.SPSHSKSPAYT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 216.23| 58| 340| 556| 613| 7 --------------------------------------------------------------------------- 556- 589 (46.46/20.10) .......................................................PM..................SGTTTPTNTFP...GGPITTLFNM.SMSIKDRHESV 590- 694 (68.53/34.19) GHGEDFS.KV.SQNPILTSLLQITGNggstigssptpphhtpppvssmagntknhPMlmnllkdnpaqdfstlygSSPLERQNSSS...GSPRMEMCSG.SNKAKKKKSSR 708- 775 (62.30/30.21) FQRELFSmDVdSQNPIFD..VNMTAD.............................TL.........dtphitpapSQCSTPPTTYPqpvPHPQSSIQRMvRLSSSD...SI 776- 822 (38.93/15.28) ..GPDVT.......DILSDIAEEASK.....................lpstsddcPP..................IGTPVRDSSSS...GHSQSALFD............. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 123.79| 38| 49| 146| 183| 8 --------------------------------------------------------------------------- 146- 164 (21.42/ 7.31) ..................................NFD.EFSKHLKGLVNLYNLP 165- 213 (53.46/29.25) GDNKLKTKMYLALQSLEQD...lskmavmywkatNAG.PLDKILHGSVG.YLTP 216- 269 (48.91/26.13) GGHLMNLKYYASPSDLLDDkttspiilhennvprSLGmNASVTIEGTSAMYKLP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 67.12| 20| 23| 938| 957| 9 --------------------------------------------------------------------------- 938- 957 (36.37/17.57) GKALGPTDLMEHHSGSQSPL 964- 983 (30.75/13.58) GKEKTQKRVKEGNGTSNSSL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 50.82| 14| 22| 451| 464| 10 --------------------------------------------------------------------------- 451- 464 (25.65/14.20) SVSFQHPVNDSLVC 476- 489 (25.17/13.80) SCKLYKGLSDALIC --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 64.38| 18| 699| 122| 139| 12 --------------------------------------------------------------------------- 122- 139 (34.40/17.85) DVKVAHHGENPVSCP.ELV 824- 842 (29.98/14.69) DVFQANNNENPYTDPaDLI --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) FGEEYF 2) IKAKVTLQK 3) IPKITIQIPKGT 4) IRPLPEYSTEKHKKHKKEKKKVKDKDR 5) KKPSLTAVIDKLKHGVV 6) RLSPDFMIGEEDDDLMDV 7) VAKIIISKH | 878 1402 1060 1484 1297 1557 1387 | 883 1410 1071 1510 1313 1574 1395 |
© 2021 Shailesh Lab
Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab