<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20931

Description F-box-like/WD repeat-containing protein TBL1X
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAATAAAAAATAAAAAATPATVSQQNTPKNGETTVNGEENGAHAINNHSKPMEIDGEVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length529
PositionTail
OrganismTrichechus manatus latirostris (Florida manatee)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Afrotheria> Sirenia> Trichechidae> Trichechus.
Aromaticity0.07
Grand average of hydropathy-0.267
Instability index37.07
Isoelectric point5.41
Molecular weight57019.89
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20931
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     371.64|      40|      40|     337|     376|       1
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  174-  209 (35.87/16.19)	..........PNKatVLRGHESE...........VFICAWNPVS.........dlL.ASGS.GDSTAR
  228-  265 (43.09/20.81)	HCirEGGHDVP....S....NKD...........VTSLDWNSDG.........tlL.ATGS.YDGFAR
  266-  295 (30.89/13.01)	I...WTEDGNLAS..TLGQHKGP...........IFALKWNKKG..........nY............
  296-  347 (44.42/21.66)	IL..SAGVDKTTI..IWDAHTGEakqqfpfhsapALDVDWQNNT..........tF.ASCS.TDMCIH
  348-  389 (63.35/33.75)	VC..RLGCDRPVK..TFQGHTNE...........VNAIKWDPSG.........mlL.ASCS.DDMTLK
  390-  440 (58.24/30.49)	IW..SMKQDTCVH..DLQAHSKE...........IYTIKWSPTGpatsnpnsnimL.ASAS.FDSTVR
  444-  482 (50.14/25.31)	VE..RGVC...IH..TLTKHQEP...........VYSVAFSPDG..........kYlASGS.FDKCVH
  483-  524 (45.62/22.42)	IW..NTQSGSLVH..SYRG.TGG...........IFEVCWNARG........dkvG.ASASdGSVCV.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20931 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAAATPATVSQQNTPKNGETTVNGEENGAHAINNHSKPMEIDGEVEIPPNKAT
126
178










Molecular Recognition Features






MoRF SequenceStartStop




1) FLVYR
10
14