<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20923
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDLAYVCEWEKWPRSTLCPSVPLACAWSCRNLIAFTTDLRNDDQDLTRMIHILDTEHPWDVHSIDSEHREAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESPVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITHLKFLARDMSEQVLLCASSQTNSLVECWSLRKEGLPVNNIFQQISPMVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQTMAVFYSSAAPRSVDEPAIKRPRTSGPAIHFKAMQLSWTSLALVGIDNHGKLNMLRISPSMGHTLDMSLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVEKLHEEYTRQNAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHAKLFLIAISSTLRSLLRPHFLNTPDKSPGDRLTEICSKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSPLRPGHSFLRDGTSLGILRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPTSEPDEALVDECCLLPSQLLIPSLDWLPVSDGLISRLQPKQPLRLQFGRAPTLPGSAAASQLDSLARAPGQPKIDHLRRLHLGAYPTEECKTCTRCGCVTMLRSPNKTTAVKQWEQRWIKNCLCGGLWRRMPLSCP |
Length | 829 |
Position | Tail |
Organism | Trichechus manatus latirostris (Florida manatee) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia>
Eutheria> Afrotheria> Sirenia> Trichechidae> Trichechus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.016 |
Instability index | 51.65 |
Isoelectric point | 7.70 |
Molecular weight | 92117.00 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | catalytic activity GO:0003824 IEA:InterPro
|
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP20923
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 132.37| 44| 188| 71| 120| 1
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71- 120 (76.71/65.67) AITCLEW...DQSGSRLL..SADADGQIKCWSM.ADHLanswesPVGSLVE......GD..PIV
267- 324 (55.66/35.08) AITHLKFlarDMSEQVLLcaSSQTNSLVECWSLrKEGL......PVNNIFQqispmvGDkqPMI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 102.31| 27| 132| 10| 36| 2
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10- 36 (53.26/28.59) EKWPRSTLCPSVPLACAWSCRNLIAFT
145- 171 (49.05/25.79) EKFSRVKFSPSLTLFGGKPMEGWIAVT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 68.97| 15| 32| 731| 745| 5
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731- 745 (28.78/16.31) QPK.QPL.RLQFGRAPT
749- 763 (20.60/ 9.72) SAA.ASQ.LDSLARAPG
764- 780 (19.59/ 8.90) QPKiDHLrRLHLGAYPT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 101.51| 30| 35| 626| 658| 9
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626- 658 (50.13/44.33) PLRPGHSFLRDGTSL..GILRELMVVIRIWGllkP
662- 693 (51.38/36.75) PVYTATSDTQDSMSLlfRLLTKLWICCRDEG...P
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