<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20894

Description BQ5605_C002g01678 protein
SequenceMVNLVEPNPPSTSSRPRVTPTTLIARWPTANAQSTVPLLARTITANLSGIATGRRALQIRPFRMAAPSTLSTGKGAGAGAGAGAGAGAGAGAGANTESSRNMWVLRTLGTADDKVFVWVNDPTQPTRRSMTTGRAQFIDKIKRNEGDDTTMDESDQEDEDEKDDSLGLETTPRHTRWTFNSLGVATNMSSSPLHVSPFDAFLQRVLLSSSSMSASSSAASIGQPITTGSPSLPSGAVHWTPRPTAVSLDGFTFSVGGPNGTGDWEVKIATVGLKGGASVGSSKGVVVEITYLPVPYLSPNSTFIRDFGSTLFPTQALATGEIDFYEPDHEQIYEAGLVSTEQDKRGEWEWSDKHSAWAYLQLFRKEGML
Length369
PositionHead
OrganismMicrobotryum silenes-dioicae
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Microbotryomycetes> Microbotryales> Microbotryaceae> Microbotryum.
Aromaticity0.07
Grand average of hydropathy-0.343
Instability index42.75
Isoelectric point5.48
Molecular weight39254.22
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20894
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.19|      10|      17|      45|      54|       3
---------------------------------------------------------------------------
   45-   54 (17.09/10.96)	ANLSGIATGR
   65-   74 (17.10/10.98)	AAPSTLSTGK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20894 with Med20 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FVWVNDPTQPTRRSMTTGRAQFIDKIKRNEGDDTTMDESDQEDEDEKDDSLGLETTPR
2) QIRPFRMAAPSTLSTGKGAGAGAGAGAGAGAGAGAGANTESSRNMWV
116
58
173
104










Molecular Recognition Features






MoRF SequenceStartStop




1) RRALQIRPFR
54
63