<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20892

Description BQ5605_C010g06126 protein
SequenceMATRLGSRGHLPSSLPPTPTQNPNSALPPINSHRFQPCPLDHVLRQHGLTRYRLEPPSWRPPWLPAGGAGSGSGPGGASTSSSSSSAAAAAAAASTSIYPQFYAPCDGQEEDQLTETAVKTGFGGKNVVQTETFSAHQLIYEKLKSEDILGNLSRLSNAVRDRAQQLVPTYGPPSFKLPKRNIVTDTKREQWFTDLSNPAVPLSKLFSIVPHGYRGQQILEMFYSKKVPFSRAIWFVRAFGALEIQNNIAKRPASAPSAVASYTLEWTLIVQEFVRKQLAEITTGEAPAASLTSPTTVTHPLRTSLSAKAHAKQPVMLDTNLRNVWTTKVSYTLRLLEALHEEHLLDSDSFLRFLVNQIDSSNIGQLPFALFLAEEYLGEFLLSEPLSARLIAACFARLDSLWSLTTPTSIYSATISTLTSLIQSTFVALPDAFIAAPLWSQYASSLTKLLDGLEDPVLMQMVRADMSDLKVRSEAASKGTEDEDSSEPDDNETIQLLDSIAFPTLLAQVHKSLFHKRRRKRGLQVELPLMFTWATCGDRAGPYRRYAAAALIAMEKQNMDMDEQPRVDIERVFIDWIDSGARTGGARKAGDEDAEIRLLLEELIRCNVIGYSSYLQRMIARGETEEASHPSKPWSSIHIKLLKTVALHDGSGRPLAKKRMALKVSSASRSESERLLEDATRELYRLVPSLVDGQSDPLAALLGDRDCTTLLGAISGLGKNGMHLVLQRDIIPVGLARLLRPKDEHMALTAEEHAILTQAYLSVEDYFGLLQYIFVVLIHAPTRDVLSCVLDLVEGNLDCWTALGALPTLGQALLIAHEGLKANGINDRRLIALLRQFGRAQCLDATNLIKLEQDYQELVLSLPAGFPELQGLLIDSSPQAIAQLGTTLWYRYHAFENWAVIAIESGVQFLAGVSASTIVRFLREINERLPTGLEAQIGKWIAQMPSYSMIAIFGAHLSSGVAILLLELVTGGILSPSALITLVILPVWRTLLNAASSPTSPVSHASVQAPSLDATLLQALDTITHIFGSLITRFSHAFGGPASTEDLSNTPAALLQRQRGDSRCASLFTQASLAELGKCVASLAVQQDFWTTLGQHERAQTTGMLLVHLNSWPAFQTAVVRDPQVFASAVLDTAAVGAAPLATNSHRPKLLAALLLTLKDSSTAIPASLVSTEDWDIFLSGLTTWRLAVSKVEVQACLERLDLDNTISDAEKAEGLTTLSRHFLDRVCSGEGHTYLGEQIVKCYHGHASDQLVSVAFSRLAEAVDGLARTASIERHTHSLTTLRCTGRLLNTLLQSSSASSQPTPLHQLLTAIRCCLEGLVDEGVSSSREAILHSAHLLAIALRCSTTVSPAATETVDLFKGCLMPCAKLAAISCRDCPNDVELSSVLLDTCSHLLFGLTDLAPSLRLPSIESIIAPEVELDSLPQAGQLRLGRLFDAAGSTLPVANPWDLVDHADPGPPQTTRHNSGPLDLAWFDAKIVTVIPPLTAMDVHNGPASSGTTANGNRFAVAATPFSTAAAHVHAITGHQATFERGRQSNFDFETPCIAMSVAARDHRRTLMTAKAQLSKYDPNNTGSAALHDTAAHSPAAGALSGPAAAPLASTAISPSAQAKKREETLAALASASATISAKRKDPPEVVVIDSDEEDEPIAQIVAAKAPAAKRGRPSNRDAAAAARKKAKT
Length1682
PositionKinase
OrganismMicrobotryum silenes-dioicae
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Microbotryomycetes> Microbotryales> Microbotryaceae> Microbotryum.
Aromaticity0.06
Grand average of hydropathy-0.027
Instability index44.05
Isoelectric point6.19
Molecular weight181488.79
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20892
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     802.12|     214|     242|    1005|    1226|       1
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 1005- 1168 (240.40/131.49)	.................................................................................HASVQAPSLD.ATLLQALDTITHIFGSLITRFSHAFGGPASTEDLSN........TP....AALLQRQRGDSRCASLFTQASLAELGKCVASLAVQQDFWTTLGQHERAQTTGMLLVHLNSWPAFQTAVVRDPQVFASAVLDTAAVGAAPLATNSHRPKLLA....ALLLT.......LKD..SSTAIPA
 1169- 1411 (270.50/168.30)	SLVSTEdwdIFLSGL.TTWRLAVSKVeVQACLERLDLDNTISDAEKAE.GLTTLSRhfldrvcsgeghtylgeqivkcyhgHASDQLVSVAfSRLAEAVDGLART..ASIERHTHSLTTLRCTGRLLN........T.......LLQSSSASSQPTPL..HQLLTAIRCCLEGLV...DEGVSSSREAILHSAHLLAIALRCSTTVSPAATETVDLFKGCLMPCAKLAAISCRDCPNDVELSS....VLLDTcshllfgLTDlaPSLRLPS
 1414- 1631 (291.22/163.42)	SIIAPE...VELDSLpQAGQLRLGRL.FDAAGSTLPVANPWDLVDHADpGPPQTTR.........................HNS..GP.LD.LAWFDA..KIVTVIPPLTAMDVH..NGPASSGTTANgnrfavaaTPfstaAAHVHAITGHQATFERGRQSNFDFETPCIAMSVAARDHRRTL.MTAKAQLSKYDPNNTGS.AALHDTAAHSP...AAGALSGPA..AAPLASTAISPSAQAkkreETLAA.......LAS..ASATISA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     267.20|      84|     100|     681|     779|       2
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  681-  776 (131.12/120.57)	TRELYRLVPSLVDGQSDPLAAL.....LGDrdctTLLGAISGLGKNGMHlvlQRDIIPvglarLLRPKDEHMALTAEEHAILTQAY....LSVEDYFGLLQYIFV
  783-  875 (136.08/88.21)	TRDVLSCVLDLVEGNLDCWTALgalptLGQ....ALLIAHEGLKANGIN...DRRLIA.....LLRQFGRAQCLDATNLIKLEQDYqelvLSLPAGFPELQGLLI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.04|      33|     112|     291|     346|       3
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   14-   46 (64.23/32.97)	SL.PPTPTQNPNSALPPINSHRFQPCPLDHVLRQ
  291-  324 (52.81/72.15)	SLtSPTTVTHPLRTSLSAKAHAKQPVMLDTNLRN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.29|      22|      40|     525|     546|       8
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  525-  546 (43.15/28.74)	QVELPLMF.TWATCGDRAGPYRR
  567-  589 (35.14/21.86)	RVDIERVFiDWIDSGARTGGARK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.79|      18|     244|     347|     364|       9
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  331-  349 (23.44/15.06)	SYtLRLLEALHEEHLLDSD
  350-  367 (29.35/21.02)	SF.LRFLVNQIDSSNIGQL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20892 with Med12 domain of Kingdom Fungi
Unable to open file!