<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20884

Description BQ5605_C009g05751 protein
SequenceMASTQLSLLGQFPVELHSTVIERLSAQCESAEAYTLAEMVYRRDGTTILQDDHALRACAFRSASTEQSNHPAKRTSWSVESPSCGGLAALSTPSKLIRLFSSPYPSVLERSVQVLQKPEPARLSPEVLQRPVIECSIEDGAHPIALASAMGILFSRASNSVHVKVYQLFASTSSTEPLDSSHYIIQLYTQFGTTSTSATGASAGRGAGVGGVAGSTTGSGGNGSGNGNGSGSGSGSGGLTMQEQKVLATASLKKVQALLKGLVDVGRVE
Length269
PositionHead
OrganismMicrobotryum silenes-dioicae
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Microbotryomycetes> Microbotryales> Microbotryaceae> Microbotryum.
Aromaticity0.05
Grand average of hydropathy-0.102
Instability index48.28
Isoelectric point7.01
Molecular weight27917.00
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20884
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.83|      16|      16|     206|     221|       1
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  206-  221 (30.69/12.20)	GAGVGGVAGSTTGSGG
  223-  238 (32.14/13.06)	GSGNGNGSGSGSGSGG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.47|      24|      48|      61|      84|       2
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   61-   84 (43.21/21.91)	RSASTEQSNHPAKRTSWSVESP..SC
  110-  135 (37.26/18.18)	RSVQVLQKPEPARLSPEVLQRPviEC
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.01|      15|      19|     159|     173|       3
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  159-  173 (26.20/15.24)	NSVH..VKVYQLFASTS
  179-  195 (22.81/12.56)	DSSHyiIQLYTQFGTTS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20884 with Med18 domain of Kingdom Fungi
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