<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20875

Description BZ3500_MvSof-1268-A1-R1_Chr2-3g05279 protein
SequenceMAGSAHKNLGLITRACWVKGVPPSSWQQLVAQTATGSLPPVEVEQQIYALLQLLADSTSTPSPLIVDYVQSAVTPSTSVAQFAPSLVRVGFFAARLTRCSINSIALDKAFDVINKTLSTAAPDTPTYAVLNADELVDALDWALGRISRLGTADSTPGELTLQSPTVSYISTFLQRSLIPFNLAGIDPQRLGATLARLDACVSTLQQLHVDPTAARISTDLQRTLLELKNALSPKGEVTSKLPVVPRARIASPRPTNSLDLVPTTQADPDIAFLIWDLSYRGHTSVGIANTPVATARIVALLKDRLAQTDARGSTHEQALSRAFLELFLAATVDQRESVGKFTRQASFAYSRLPELLRNIAANRKVDVPGSPDLVRSAFDSSVRLFSDSTRTESEDAMALDGATTRPVLDALVAGLCQHELISTDLAASLSPSLHQSQLVPSSFPSTTAQLMSGSIDSVREVFASLETHGSASHRAISDSLVEAVSSLASSVDIPGLSSICSVLVEQPSILSIVFLHVQPFLVLSPIRSLLDTFGSSLENLGYDDPSTGYGVVLLFLQVVVSRHGLQTDLSYHLGSRRGFLVQWLPSISATYSLISLDDDAKATVNGWIQALFGDGISDELMHQTNPRTLLKVLPTVAKQSLAACHAGVIDAEQLRDGLSFLLQGLLSFTLPGVLKWLVGEIERTPTGDYQIMMLDILSVLIFSESLPKTIVELVASDLATLVHRLPSTTSTIIDVKRVQSLIQPYRKAVVGAKAHATPSPSSEIAAAFDLSFDRTIYSSSLTIMLYTLLNSSPPSSSRIDEMRITRLAKTILLVPSHSTDLVDAYAARFTSFILQDLPSMSIDLLNATKLGSWIGGALKAYELIENELVHEGQSSGGVFDLLVASVVKDVKRRSALKLGDDEAVEIWAQALTAKCRRFGEGLEKPPAPMSRWRGRPLPSLSLSLSHVTSRHVTWVIGSSHRANSCDRDLGNVALGDNLARVVGQQRPSLSYLIMMSLLFFMMSSGNDGIREPVTDKSTFDALRSSLKRKEDKRDGLADWLHVDRYNRTLLDDKLNMTGLYNDSEPNEVIQFVPKEAINEVLSSEIEALVRRQPDELGMAYYHQNLTGMARGDWEMDKDWTLERLGLPETWNVTTRQRVEEVELTDGPILMDGISEQPDSVGAAAQEAARARLRRRQAEIPATEVPEKNVTWENVTTVMNRTVLRNKFAFETGGRVLLDLREYQSTAPGSVIASTESGQLLRIDPEARRQEWEQVGPTTFLRGEITLTDADKIEEARFDIEAVHYLEDGTMVGYATPSWVRSHMFDLVGLAKTLERRDGEQWKQLAAGHTILKELDRRIAREREDLEETLDNESQRPQEEKSAPQGPQCIFTFYGSLAPLPPHYSAPLYAEYYASLWHPTGSSLKPPPPPQITYKLYSENCGLVVSGQAELLTTPRLWEYGTTFAVLMGFTQMLMAWVLARQMDRGAPGHAGKVAYFTIGVQTSLDAYFFVTAFTVALVTEAVMYTDTRASLPFMVPAFFALISSLIFSMRYATEIRNATPPPPSRPAPPPPPPAPTVEELAARAAERRAAAEAAGEASAGNDEANVATPLLPAATTTAPSTPAPGGVSDSYLVGIGISIAIAFGTVVWFFGWVVLITLLAYSYWIPQIIVNVQRGAARGSLRREYVIVTTLGRLVMPCYFWGYKGNVFAIETTPWVLLLVLYSVGQAAILVVQDSRFGARFFLPTRAIDALHLAELETWDYHPIPTSMDLETSVYAISPYHSEDCPICLSSIQIHPTKEEEADSGTRNKLRWSYMVPPCHHLMHTECMESWIAVKSVCPICRARLPSL
Length1828
PositionTail
OrganismMicrobotryum saponariae
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Microbotryomycetes> Microbotryales> Microbotryaceae> Microbotryum.
Aromaticity0.07
Grand average of hydropathy-0.013
Instability index49.66
Isoelectric point5.49
Molecular weight200153.04
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20875
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     131.34|      41|      50|     143|     183|       1
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  143-  164 (23.96/ 8.17)	.............................LG.RISRLGTADSTPGE.LTLQSP
  165-  211 (53.86/27.14)	TVSYISTFLQRSLIPFNLA....gidpqrLGaTLARLDACVSTLQQ.LHV.DP
  212-  263 (53.51/26.92)	TAARISTDLQRTLLELKNAlspkgevtskLP.VVPRARIASPRPTNsLDLVPT
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.02|      18|      50|    1538|    1555|       2
---------------------------------------------------------------------------
 1538- 1555 (40.44/18.76)	ATPPPPSRPAPPPPPPAP
 1587- 1604 (33.58/14.26)	ATPLLPAATTTAPSTPAP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.47|      44|      51|    1724|    1768|       3
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 1724- 1768 (77.79/53.54)	PTRA..IDALHLAELEtWDYHPIPTSMDLETSVYAISPYHSEDCPIC
 1776- 1821 (81.68/51.92)	PTKEeeADSGTRNKLR.WSYMVPPCHHLMHTECMESWIAVKSVCPIC
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.11|      26|     291|      84|     109|       4
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   84-  109 (47.21/38.82)	PSLVRVGF.FAARL....TRC.SINSIALDKA
  371-  402 (31.90/23.04)	PDLVRSAFdSSVRLfsdsTRTeSEDAMALDGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.03|      49|      52|     411|     462|       5
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  411-  462 (73.14/49.67)	L.VAGLCQHELISTDLAASLSpSLHQSQLVPSSFPSTTAQLMSGSIDSVreVF
  465-  514 (75.89/41.55)	LeTHGSASHRAISDSLVEAVS.SLASSVDIPGLSSICSVLVEQPSILSI..VF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     156.29|      30|      50|     564|     593|       6
---------------------------------------------------------------------------
  564-  593 (50.41/32.79)	GLQTDLSYHLGSRRGF....LVQWL.....PSISATYSL
  615-  641 (39.98/24.21)	GISDELMHQTNPRT......LLKVL.....PTV.AKQSL
  653-  691 (34.76/19.92)	QLRDGLSFLLQGLLSFtlpgVLKWLvgeieRTPTGDYQI
  705-  731 (31.13/16.93)	SLPKTIVELVASDLAT....LVHRL.....PSTTST...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.53|      30|      52|     272|     303|       7
---------------------------------------------------------------------------
  272-  303 (46.01/32.58)	FLIWDLSYRghTSVG..IANTPVATARIVALLKD
  327-  358 (45.52/25.39)	FLAATVDQR..ESVGkfTRQASFAYSRLPELLRN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.32|      17|      20|     815|     833|       8
---------------------------------------------------------------------------
  815-  833 (26.42/27.52)	PSHSTDLVDayAARFTSFI
  838-  854 (31.90/23.94)	PSMSIDLLN..ATKLGSWI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.94|      34|     218|    1114|    1147|       9
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 1114- 1147 (61.01/43.03)	EMDKDWTLERLGLPETWNVTTRQRVEEVELTDGP
 1333- 1366 (57.94/40.43)	ELDRRIAREREDLEETLDNESQRPQEEKSAPQGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.09|      22|      60|    1632|    1658|      12
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 1632- 1658 (28.06/37.17)	WVVLITLlaYSywIPQ..IIVnVQ..RGAAR
 1695- 1720 (32.03/19.04)	WVLLLVL..YS..VGQaaILV.VQdsRFGAR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20875 with Med5 domain of Kingdom Fungi
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