<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20874

Description BZ3500_MvSof-1268-A1-R1_Chr9g10806 protein
SequenceMGVHPRGSNTSRDGSPLHASSSANTPSGQPKAKKARRSKVAEACKFCRRSHMSCDAARPCSRCVKRDIAHLCIDEGLQLQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQQSSQAGSSSLPLPQHSHPRFHDNSSPLRATSGSPAPAPTPSLANLGPLPSLPNPSPSPQFTRVIPPNPYPTSSMAPTSPLVNFGPQSTLSGFPPLLNNNFNLAMLDLASDREGMGAGLGLDMSAENGDFQGLGLRPLLTTQSEFLQSLNDSPFALSEPLAPTPNSAQQQAQQQSQQMSQPIPQLDLDGLPTNTKTALEGEPNAAGTEPPSNNRSAGPSVPGSPINKTERFLLTAADQKDGSRSDRLARVIHAKFEAGLLRPYNHVAGYTRLMRWMADNMSQSSRQRTLQTLSEFRPAFRAIASGLTDLDLVFIEEAFERLLLDYDRVFSSMGIPSCLWRRTGEIYKGNKEFAALVGVPIEHLQGGKLAIYELMAEESAVNYWEKYGNVSWAFRGGEIRLGGVGLTDVFLCGSLQIAFDAGQKAVLTSCVLVNQSILKRKKKKAGVDKAKLRKDAMISCCFSFTIRRDSYAIPSAIVGNFLLQ
Length612
PositionTail
OrganismMicrobotryum saponariae
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Microbotryomycetes> Microbotryales> Microbotryaceae> Microbotryum.
Aromaticity0.06
Grand average of hydropathy-0.407
Instability index62.71
Isoelectric point9.12
Molecular weight65753.47
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
DNA-binding transcription factor activity, RNA polymerase II-specific	GO:0000981	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20874
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     127.00|      15|      15|      80|      94|       1
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   80-   94 (32.41/14.55)	QAQAQAQAQAQAQAQ
   96-  110 (32.41/14.55)	QAQAQAQAQAQAQAQ
  111-  122 (20.35/ 6.89)	...AQAQAQAQAQAQ
  124-  135 (19.14/ 6.13)	QAQAQAQQSSQA...
  296-  309 (22.69/ 8.38)	.AQQQAQQQSQQMSQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.81|      14|      16|     164|     177|       2
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  164-  177 (28.29/12.60)	PAPAPTPSLANLGP
  182-  195 (25.51/10.68)	PNPSPSPQFTRVIP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.50|      13|      16|     320|     335|       3
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  320-  335 (15.68/22.04)	PTNTKTAleGePNAAG
  339-  351 (25.82/18.08)	PSNNRSA..G.PSVPG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.80|      15|      16|      41|      55|       5
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   41-   55 (31.12/18.12)	AEACKFC.RR..SHMSCD
   57-   74 (21.68/10.73)	ARPCSRCvKRdiAHLCID
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.46|      16|      16|     198|     213|       6
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  198-  213 (30.99/17.07)	PYPTSSMAPTSPLVNF
  215-  230 (30.47/16.66)	PQSTLSGFPPLLNNNF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.22|      31|      38|     365|     401|       7
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  365-  401 (42.22/46.40)	ADqkDGSRSDRlARVIHAKFEaglLRP.YNHVA.GYTRL
  406-  438 (46.00/29.60)	AD..NMSQSSR.QRTLQTLSE...FRPaFRAIAsGLTDL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20874 with Med3 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FNLAMLDLASDREGMGAGLGLDMSAENGDFQGLGLRPLLTTQSEFLQSLNDSPFALSEPLAPTPNSAQQQAQQQSQQMSQPIPQLDLDGLPTNTKTALEGEPNAAGTEPPSNNRSAGPSVPGSPINKTERFLLTAADQ
2) LQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQQSSQAGSSSLPLPQHSHPRFHDNSSPLRATSGSPAPAPTPSLANLGPLPSLPNPSPSPQFTRVIPPNPYPTSSMAPTSPLVNFGPQSTLSGFPPL
3) MGVHPRGSNTSRDGSPLHASSSANTPSGQPKAKKARRSKVA
230
79
1
367
225
41










Molecular Recognition Features






MoRF SequenceStartStop




1) KAKKARRSK
31
39