<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20872

Description BZ3500_MvSof-1268-A1-R1_Chr7-1g09226 protein
SequenceMAANFYLSSHANYHLHPRSALLAARVDDLRHATEQEIAWVEIWSGSGESLCFDLGCTFIQKLCKRLGLRQQVIATAIVYFRRFYLRNAYCDTDCALVAAACCYVAAKAEETPVHVKSAVAEAKMVFHDMGLAFPSDNTKLAEMEFYLVEELDFHLIVFHPYRSLVQLCGRDGGPSAGGEQGRLNRQAMLEMDEPALQMAWFIINDTFRSSLCLVHPPHLIALAAIYLAFSLHPPPSVVKETATANSKDPSISGPASRTRRRSTDVTPPTAPGTQATTSSTVATTVPTVGGRTDAITFLASLQVDHSLILEIVQDVISLYELWNQLEASAQATSPSSTASQGGPSAAPVSRTGIGGGAGRTTSVSADEKVVIILARMMKDRHREVQSERGGRGATGWKK
Length398
PositionKinase
OrganismMicrobotryum saponariae
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Microbotryomycetes> Microbotryales> Microbotryaceae> Microbotryum.
Aromaticity0.07
Grand average of hydropathy-0.056
Instability index50.35
Isoelectric point6.67
Molecular weight43179.70
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20872
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.80|      29|      73|     158|     186|       1
---------------------------------------------------------------------------
  158-  186 (54.25/28.86)	FHPYRSLVQ..LCGRDGGPSAGGEQGRLNRQ
  231-  261 (47.55/24.57)	LHPPPSVVKetATANSKDPSISGPASRTRRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.79|      10|      16|     268|     277|       3
---------------------------------------------------------------------------
  268-  277 (19.90/13.28)	PTAPG.TQATT
  286-  296 (14.89/ 8.02)	PTVGGrTDAIT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.35|      12|     146|       4|      15|       4
---------------------------------------------------------------------------
    4-   15 (23.37/16.65)	NFYLSSHANYHL
  144-  155 (21.98/15.29)	EFYLVEELDFHL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20872 with CycC domain of Kingdom Fungi
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