<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20863

Description BZ3500_MvSof-1268-A1-R1_Chr9g10375 protein
SequenceMTTRLGSRGHLPSSLPPTLTQNPNSALPPINSHRFQPCPLDHVLRQQGLTRYHLEPPSWRPPWLPARGGAGSGSGSGPGGASTSSSSSSAAAAAASTSIYPQFYAPCDGQEEDQLTETAVKTGFGGKNVVQTETFSAHQLIYEKLKSEDILGNLSRLSNAVRDRARQLVPTYGPPSFKLPKRNIVTDTKREQWFTDLSNPAVPLSKLFSIVPHGYRGQQILEMFYSKKVPFLRAIWFVRAFGALEIQNNIAKRPASAPSAVASYTLEWTLIVQEFVRKQLAEITTDEAPAASLTSPTTVTHPLRTTLSAKAQAKQPVMLDNNLRNAWTTKFSYTQPAAAHSLRLLEALYEEHLLDSDSFLRFLVNQIDSSNIGQLPFALFLAEEYLGELLLSEPLSARLIAACFARLDSLVSLTTPASIYSATTSTLTSLIRSTFVALPDAFIAAPLWSQYASSLTKLLDGLEDPVLVQMVRVDMSDLKVRSEAASKGTEDEDSSEPDDNETIQLLDSIAFPTLLAQVHKSLFHKRRRKRGLQVELPLMFTWATCGDRAGPYRRYAVAALIAMEKQNMGVDEQPRVDIERVFIDWIDSGARTGGARKASDEDAEIRLLLEELIRCNVIGYSSYLQRMIARGETEEASCASKPSSSIHIKLLKTVALHDGSGRPLAKKRMALKVSSASRSESERLLGDATRELYRLVPSLVDGQSHPLAALLGDRDCTTLLDAISGLGKNGMHLVLQRDTIPVGLARLLRPKDEHMALTAEEHAILTQTYLAVEDYFGLLQYIFVVLIHAPTRDVLSCVLDLIEGNLDCWTALGALPTLGQALLIAHEGLKSDGINDRRLIALLRQFGRAQCLDALNLTKLEQDYQELVLSLSTSRPQQQSLPAGFPELQGLLIDSSPQAIAQLGTTLWYRYHAFENWAVIAIESSVQLLAGVSASTIVRFLREINERLPTGLEAQIGKWIAQMPSYSMIATFGAHLSSGVAILLLELVTGGILSPSALITLVILPVWRTLLNAASSPTNPVSHAPIQGPSLDATLLQALDTITHIFGSLITRSSHAIGGFASTEDPSNTPAALLQRQRGDSRCASLFTQASLAELGKCVASLAVQQDFWTTLGQHERAQTTGMLLVHLNSWPAFQTAVVRDPQVFASAVLDTAAVGAAPLATNAHRPKLLAALLLTLKDSSTAIPASLVSTEDWDLFLSGLTTWRLAVSKVEVQACLERLDLDHTISDAEKAEGLNTLSRHFLDRVCSGEGHTYLGEQIVKCYHGHASDELVSVAFSRLAEAVDGLARTASIERRTHSLTTLRCTGRLLNTLLQSSSASSQVTPLRQLLTAIRCCLEGLVDEGVNSSREAILHSAHLLAIALRCSTTVSPAATETVDLFKGCLIPCAKLAALSCRDCPNDVELSSVLLDTCSHLLFGLTDLAPSLRLPSIESIIAPEVELDSLPEAALLRLERLFDAAGSTLPVANPWDLVDHADPGPPQTTRHNSGPLDLAWFDAKILTVIPPLTAMDVHNGPASSGTMTNGNRFAVAATPFSTAAAHVHAITGHQATFERGRQSNFDFETPCIAMSVAARDHRRTLMAAKAQLSKYDPNNTGSAAPAAHSPAAGAPSGSAAAPQASTAISPSAQAKKREETLAALASASASATISAKRKDPPEVVVIDSDEEDEPIAQIVAAKAPAAKRGRPSNRDGASAARKKVKT
Length1699
PositionKinase
OrganismMicrobotryum saponariae
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Microbotryomycetes> Microbotryales> Microbotryaceae> Microbotryum.
Aromaticity0.06
Grand average of hydropathy-0.043
Instability index46.40
Isoelectric point6.25
Molecular weight183282.70
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20863
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.28|      15|      15|    1586|    1600|       1
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 1586- 1600 (28.13/14.70)	SKYDPNNTGS.AAPAA
 1602- 1617 (23.15/10.68)	SPAAGAPSGSaAAPQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     135.53|      41|     233|    1050|    1102|       2
---------------------------------------------------------------------------
  701-  728 (41.52/13.84)	..............DGQSHPLAALL....GDRDCTTLL..DAISGLGK
  823-  851 (40.16/15.99)	LI....AHEGLKSDGINDRRLIALL.RQFGRAQC..............
 1050- 1097 (53.85/49.46)	ITrsshAIGGFASTEDPSNTPAALLqRQRGDSRCASLFtqASLAELGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.44|      41|     276|      16|      57|       3
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   16-   57 (73.67/52.46)	PPTLTQNPNSALPPINSHRfQPCPLDHVLRQQGLTRYHLEPP
  296-  336 (72.76/46.66)	PTTVTHPLRTTLSAKAQAK.QPVMLDNNLRNAWTTKFSYTQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.03|      28|     275|    1169|    1196|       4
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 1169- 1196 (45.43/26.65)	LLAALLLTLKDSSTAIPASLVSTEDWDL
 1443- 1470 (48.60/29.07)	LPEAALLRLERLFDAAGSTLPVANPWDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.52|      15|      15|     973|     987|       5
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  973-  987 (24.07/15.83)	GAHLSSGVAILLLEL
  990- 1004 (24.44/16.21)	GGILSPSALITLVIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.71|      20|     275|    1010|    1037|       6
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   94-  113 (38.59/19.54)	AASTSIYPQFYAPCDGQEED
 1013- 1032 (37.12/27.39)	AASSPTNPVSHAPIQGPSLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.19|      12|     508|      74|      85|       8
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   74-   85 (22.64/10.97)	SGSGPGGASTSS
  588-  599 (21.55/10.10)	SGARTGGARKAS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.19|      26|      28|    1309|    1334|      14
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 1309- 1334 (43.86/29.34)	LNTLLQSSSASSQVTPLR..QLLT.AIRC
 1336- 1364 (35.32/21.97)	LEGLVDEGVNSSREAILHsaHLLAiALRC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.38|      27|      35|    1378|    1405|      16
---------------------------------------------------------------------------
 1378- 1405 (45.91/37.55)	LFKGC.........LIPCAKLAALSCRDCPnDVELSS
 1407- 1442 (38.47/25.20)	LLDTCshllfgltdLAPSLRLPSIESIIAP.EVELDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.29|      20|      33|    1631|    1653|      17
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 1631- 1653 (27.17/25.33)	EETLAALASASASAtisAKRKDP
 1665- 1684 (34.12/23.14)	DEPIAQIVAAKAPA...AKRGRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.65|      30|      33|    1507|    1537|      18
---------------------------------------------------------------------------
 1507- 1537 (47.68/33.35)	AMDVHNGPASSGTMTNGNrFAVAATPFSTAA
 1542- 1571 (52.97/32.60)	AITGHQATFERGRQSNFD.FETPCIAMSVAA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.72|      52|     386|     455|     525|      19
---------------------------------------------------------------------------
  455-  525 (68.01/86.13)	LTKLLDGLEDPVLvqmvrvdmsdlkvrSEAASKgteDEDSSEPDDNETIQ..LLDSiaFPTLLAQVHKSLFHK
  857-  910 (85.71/58.28)	LTKLEQDYQELVL..............SLSTSR...PQQQSLPAGFPELQglLIDS..SPQAIAQLGTTLWYR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.56|      27|     867|     385|     411|      20
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  385-  411 (45.11/27.71)	YLGELLLS...EPLSARLIAACFARLDSLV
 1254- 1283 (39.46/23.27)	YLGEQIVKcyhGHASDELVSVAFSRLAEAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.23|      23|     912|     231|     254|      21
---------------------------------------------------------------------------
  231-  254 (37.76/32.05)	FLRAIWFVRAFGALEIQNNiAKRP
 1145- 1167 (39.47/28.03)	FASAVLDTAAVGAAPLATN.AHRP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20863 with Med12 domain of Kingdom Fungi
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