Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MDSLNNVALRPWPAPKKEELTQEDLLFKIEQLASERGHLRNITEQSLQEDIDAGKNAPGHGSDAGAVKEEEKKEKEAPSLQEQREKVLKVGMEMYSHLEWAKFAANNALDLVSLILSQDPNKRSLNFFSPTFQEQGLKQGIPLGSFGVSKENHEHRVRKPEEQHRLQDLEARQEAVAQGARMGALDSSVDEILKAAKNLEKQIRRETKYWHEIVTVSDKGWPIQRLRQNVRHAPFGVRYGLPEASDHFKARGFAPLQMDKDGSIILDPALALKPKILRVRVSIDGNITGTTQLSAADDLANQSLEKSIQLARDSLLEEELYYEMSLETRQLLAYGVEFRDSVIYVDAPQMGGVSHERKLLIDCIPRDDPVPSSRSHEHDWMARNIAEGLRLLLAHEHSMRLYRRSQLPPPLTTRKREKPSPSLLRTLLAVIHHIEAVDSLYVYLESLARTLNSVGLDVTLDTTRETSWATLVESLGTPSMKGQSATDQLFEVFMKPFDGKATMSLPVSTGAQHESLSITTRTIIGQPTFGTEHKLILPPTLGIDLGLSQQQKFAAVEEITSYVDWILSLHLTHRLLQNEYSSRAQALSQDARLSIKGKDRKKGVKSSKDIEIELNNGELKASVLIVDTVQDIEEVEQSRTWSGKDGNNSSLREVIKSWVD |
Length | 660 |
Position | Head |
Organism | Pyrenophora tritici-repentis |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Pleosporineae> Pleosporaceae> Pyrenophora. |
Aromaticity | 0.05 |
Grand average of hydropathy | -0.515 |
Instability index | 50.96 |
Isoelectric point | 5.98 |
Molecular weight | 74184.15 |
Publications | PubMed=29685100 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP20849 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 167.47| 56| 259| 264| 321| 3 --------------------------------------------------------------------------- 264- 321 (79.48/50.26) IILDPALALKPK.ILRVRVSIDGNITGTTQLSAADDLANQ.SLEKSIQLARdSLLEEElY 523- 580 (87.99/47.91) IIGQPTFGTEHKlILPPTLGIDLGLSQQQKFAAVEEITSYvDWILSLHLTH.RLLQNE.Y --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 217.76| 70| 116| 13| 83| 4 --------------------------------------------------------------------------- 13- 83 (110.21/73.15) PAPKKEELTQEDLL..FKIEQLASERgHLRNITEQSLQEDIDAGKNAPGHGSDAGAVKEE.EKKEKEAPSLQEQ 130- 202 (107.56/66.77) PTFQEQGLKQGIPLgsFGVSKENHEH.RVRKPEEQHRLQDLEARQEAVAQGARMGALDSSvDEILKAAKNLEKQ --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) EDLLFKIE 2) VALRPW | 23 7 | 30 12 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab