<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20827
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MTSSEQWGIFLHRCLLHRIDAAEFKSLSRLLLQRCPITEALLLDVLLETRLSTGIKWDPLLPLYIDCLCKMGLAQTSTVLNALLKHSSIHDKHQSSSVEAYPGKKSRKCYTLMTDIRVVQDAMLSVSTGSVPKSFSEAISIFTAIIDWIQAVVAWNSSHIDSGHQSPGLVSSPDAVSLFESLGILLAALSGTTKGLEVLSADSQEALKVKLGQALSAYLPICVEVSLPLRNRLDSLQKEFNLYGEPPAKPLDVSMMEGVNVNALQFEASVMDGPMINSRAGLFVYINAMLVGRPLVDDSMLLNYLSNRYGGHYEVLIEETITAAFDVLSNASYRSESNRSMFLFRSFLVNKLPAFFAAMLAASMVTLPMELCISHALGRLDPNTFPSFSQMFTMQSNTALSDVRQEFLFACASHKLIPESSIERLLGENPMQTLPVGGPYNKDDLVNQINANPERAEHLIGEIESMEGNAGAIVGAIVEVMHNLCNQKETMTLKNICNSLSRRPQAMDVILLFRSTKQVLQPLCSLLDAWHWDEDQGESQPVYDEFGSILLLVLAFTYRYGLRAQDLGLGGSNSFVLQILGSGSCSQKLDSLSDKQNKNLGGWITALFIAEGISEETMSACSPQEFYLLVATLFSQSLGACEAGKLEFDTLKGGSEYLLEPFLLPSLVLALNWLGNHIWETEGDPSIPLKALHSLINPTSISGEAKEIHRTVLNMTARGLEEQLKDVRARHPSRTDIKPILDALEPCLSFERSGSCHRSELDSWTSHSPGGLLGSIRSAFQSLVLWSASPHVSVAPHSYTHRQLVTGVLLLGATRVLGALVEELKLQTETGSGDVALDIAATLICAPMAEYFAIDQNNHSHQPLDPTKESFPRCPILTLRSALNLLHDNIPKISEKDPIRAEVIVRLYRRVNALMTPPAQVPNLDMNNIIQHMQLGVGGPGQMDLDPQGASGHGVTDDDAANLNRMLDNAAAAAAVGMDGGQTMGGMGLESSSGLDTSIDDVLNAADMAVGNPEFLDLDMEGLF |
Length | 1024 |
Position | Tail |
Organism | Aspergillus indologenus CBS 114.80 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
|
Aromaticity | 0.06 |
Grand average of hydropathy | 0.030 |
Instability index | 45.50 |
Isoelectric point | 5.06 |
Molecular weight | 111592.55 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 ARBA:ARBA00003669
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP20827
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 117.24| 39| 68| 325| 368| 1
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305- 347 (59.94/50.26) LSNRYGGHYEVLIEET.ITAAFDV.LSNASYRSESNRsmflFRSF
348- 388 (57.29/42.53) LVNKLPAFFAAMLAASmVTLPMELcISHALGRLDPNT....FPSF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 40.46| 11| 14| 13| 23| 2
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13- 23 (20.12/13.65) RCLLHRIDAAE
29- 39 (20.34/13.88) RLLLQRCPITE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 630.64| 218| 620| 45| 290| 3
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45- 290 (318.18/255.39) VLLETRLSTGIkW....DPLLPLyiDCLCKMgLAQTSTVLNALLKHSSIHDKHQSSSVEAYPGKKSRkcYTLMTDIRVVQDAM...LSV.STGSVPKSFSEAIS......IFTAIIDWIQAVVAWNSS.HIDSghqSPGLVSSPDAVSlfeslGILLAalsGTTKgleVLSADSQE.ALKVKLGQ...ALS.AYLPICVevslPLRNRLDSLQkefNLYGEPPAKPLDVSMMEgVNVNALQFEASVM.DG.PMINS....RAGLFV..Y..INAML
668- 915 (312.46/185.50) VLALNWLGNHI.WetegDPSIPL..KALHSL.INPTSISGEAKEIHRTVLNMTARGLEEQLKDVRAR..HPSRTDIKPILDALepcLSFeRSGSCHRSELDSWTshspggLLGSIRSAFQSLVLWSASpHVSV...APHSYTHRQLVT.....GVLLL...GATR...VLGALVEElKLQTETGSgdvALDiAATLICA....PMAEYFAIDQ...NNHSHQPLDPTKESFPR.CPILTLRSALNLLhDNiPKISEkdpiRAEVIVrlYrrVNALM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 103.69| 24| 70| 926| 949| 4
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926- 949 (45.48/27.49) MNNIIQHMQLGV.GGP..GQMDLDPQG
967- 989 (18.33/ 6.56) LDNAAAAAAVGMdGGQtmGGMGL....
999- 1022 (39.89/23.18) IDDVLNAADMAV.GNP..EFLDLDMEG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 43.77| 14| 33| 418| 432| 7
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418- 432 (22.17/19.48) PESSiERLLGE.NPMQ
453- 467 (21.61/13.06) PERA.EHLIGEiESME
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