<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20811
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MTSSEQWGIFLHRCLLHRIDAAEFKSLSRLLLQRCPITEALLLDVLLETRLSTGIKWDPLLPLYIDCLCKMGLVQTSTVLNALLKHSSIHDKHQSSSVEAYPGKKSRKCYTLMTDIRVIQDAMLSVSTGSVPKSFSEAISIFTAIIDWIQAVVAWNSSNIDSGDQSPGLISSPDTVSLFESLGILLAALSGTTKGLEVLSADSQEALKVKLGQALSAYLPICVEVSLPLRNRLDSLQKAFNLYGEPPAKPLDVSMMEGVNVNALQFEASVMDSPMINSRAGLFVYINAMLVGRPLVDDSMLLNYLSNRYGGHYEVLIEETITAAFDVLSNASYRSESNRSMFLFRSFLVNKLPAFFAAMLAASMVTLPMELCISHALGRLDPNTFPSFSQMFTMQSNTALSDVRQEFLFACASHKLIPESSIERLLGENPMQTLPVGGPYNKDDLVNQINANPERAEHLIGEIESMEGNAGAIVGAIIEVMHNLCNQKETMTLKNICNSLSRRPQAMDVILLFRSTKQVLQPLCSLLDAWHWDEDQGESQPVYDEFGSILLLVLAFTYRYGLRAQDLGLGGSNSFVLQILGSGSCSQKLDSLSDKQNKNLGGWITALFIAEGISEETMSACSPQEFYLLVATLFSQSLGACEAGKLEFDTLKGGSEYLLEPFLLPSLVLALNWLGNHIWETEGDPSIPLKALHSLINPTSISGEAKEIHRTVLNMTARRLEEQLKDVRARHPSRTDIKPILDALEPCLSFERSGSCHRSELDSWTSHAPGGLLGSIRSAFQSLVLWSASPHVSVAPHSYTHRQLVTGVLLLGATRVLGALVEELKLQTQTGSGDVALDIAATLICAPMAEYFAIDQNNHSHQPLDPTKEFFPRCPILTLRSALNLLHDNIPKISEKDPLRAEVIVRLYRRVNALMTPPAQVPNLDMNNIIQHMQLGVGGPGQMDLDPQGASGHGVTDDDAANLNRMLDNAAAAAAVGMDGGQTMGGMGLESSSGLDTSIDDVLNAADMAVGNPEFLDLDMEGLF |
Length | 1024 |
Position | Tail |
Organism | Aspergillus violaceofuscus CBS 115571 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
|
Aromaticity | 0.06 |
Grand average of hydropathy | 0.036 |
Instability index | 46.63 |
Isoelectric point | 5.05 |
Molecular weight | 111761.85 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 ARBA:ARBA00003669
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP20811
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 117.24| 39| 68| 325| 368| 1
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305- 347 (59.94/51.40) LSNRYGGHYEVLIEET.ITAAFDV.LSNASYRSESNRsmflFRSF
348- 388 (57.29/43.48) LVNKLPAFFAAMLAASmVTLPMELcISHALGRLDPNT....FPSF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 454.76| 193| 620| 11| 222| 2
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11- 134 (155.84/109.84) ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LHRCLLHRIDAAEFKSLSRLLLQ...........................RCPI.TEALLLDVLLETRLSTGIKW....DPLLPLyiDCLCKMgLVQTSTVLNALLKHSSIHDKHQSSSVEAYPGKKSRkcYTLMTDIRVIQDAM...LSV.STGSVPKS
135- 222 (53.10/57.19) FSEAI.SIFTAIIDWIQAVVAWnssnidSGdqSPGLISSPDTVSLFESL.GILLAalsGTTKgleVLSADSQE.ALKVKLGQ...ALS.AYLPIC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
638- 759 (146.94/86.85) ...............................................................................................vevslplrnrldslqkafnlygeppakpldvsmmegvnvnalqfeasvmdspminsraglfvyinamlvgrplvddsmllnylsnrygghyevlieetitaafdvlsnasyrsesnrsmflfrsflvnklpaffaamlaasmvtlpmelcishalgrldpntfpsfsqmftmqsntalsdvrqeflfacashklipessierllgenpmqtlpvggpynkddlvnqinanperaehligeiesmegnagaivgaiievmhnlcnqketmtlknicnslsrrpqamdvillfrstkqvlqplcslldawhwdedqgesqpvydefgsilllvlaftyryglraqdlglggsnsfvlqilgsgscsqkldslsdkqnknlggwitalfiaegiseetmsacspqefyllvatlfsqsLGACEAGKLEFDTLKGGSEYLLE.............................PF.LLPSL..VLALNWLGNHI.WetegDPSIPL..KALHSL.INPTSISGEAKEIHRTVLNMTARRLEEQLKDVRAR..HPSRTDIKPILDALepcLSFeRSGSCHRS
765- 899 (98.88/56.89) TSHAPgGLLGSIRSAFQSLVLW......SA..SPHVSVAPHSYTHRQLVtGVLLL...GATR...VLGALVEElKLQTQTGSgdvALDiAATLIC......................................................................................................................................................................................................................................................................................................................................................................................................................................................apmaeyfaidqnnhshqpldptkeffpRCPIlTLRSALN.LLHDNIPKISEK....DPL..............................................................................
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 32.97| 10| 32| 423| 432| 3
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423- 432 (19.02/12.40) ERLLGE.NPMQ
457- 467 (13.95/ 6.94) EHLIGEiESME
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 50.11| 14| 499| 434| 448| 4
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434- 448 (23.50/17.39) LPVGGPyNKDDLVNQ
935- 948 (26.62/14.26) LGVGGP.GQMDLDPQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 100.95| 30| 39| 951| 980| 6
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951- 980 (50.24/30.63) SGHGVTDDDAANLNRMLDNAAAAAAVGMDG
993- 1022 (50.71/30.98) SGLDTSIDDVLNAADMAVGNPEFLDLDMEG
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