<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20782
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MEDQSYPSMDVDDLFGDAEQVALPSINVIATPPVKGLAKRLDELSTSGCSSKIAWSKNGCVAYITPDRYAVHIRVFSRDPSTGKWDLGKATPVDIPHGQDDFPFVHVSWSNLGNDLSIINAAGQVMIFSCAMALDRMGYMRSELTHPEADMDFVIGMHWLAIMPHEQQNQIAWSANKIGDTWSFHIEQHHFKHMHHPADQKAALVYLKSRGDLRLRFQQPDSSWQEVGSPLESTLSTREAFTHAAFASNGDNTLLLAAYAVSGRLHLYRVETSWNVPPLKPGQPHPKQYDKPQIVISLLNIEDNCYPTMMSSDMNGGGESRVRLPAQLTHLDFLPATPEKNDGSVPTIQMVFSTPPNVVPMDQTQQAQTPFSVVVRWEVHQLQRNMLHSSLDKVSSKKKSVNSVPARNIWTLKRQEDGMMHSVVLSFTPIWYSMVLGFVYSDGTIEFRKRGTMAIISPDYSTEAVTSMSQSGFSFPPHEASLYTALSPNQCVAACMQTDGKITLRSMDYTHGSLSAAEDPDHRISAALAALALQTSTAANQYITSDDIFSIIENLPASRKDEFTKLMFQSLSVSIDCGIDDQSSNHLILLGRSPFFVKTLSAIHVLGLHGKVSRSLSSLTAWVILNIKYVTQIITTIARMHGQIDKQPLRPEVVPQFVGLCQWSMHFMTYIIDDLLELSRGLTKPGAPPLTKDLLEATLHQSKRPALLFLLSGFPRTMLKLWTQPLAWVMRSAATYSNASAPPEMRKLYTPLHAVLHEAPADFRQFDYLIREVEHLVRGCYRRDPSASKEGKEGEAARNQAERELLAGRIPEVLWPAARKLVSESLWGPAQGRGEAAEAMYFADKVDVARITFFDTTWLGFTDSRRAQSYFDTHVVDVCQKMVIRGPSAQPHHGALSRSAKRNRSDSIQSAGGAGNVDDKRKERKLRQCVRCSACMEDVLMGLPGYAATHVSWLMGVAKHCICGNSWMLVNEKDLLK |
Length | 977 |
Position | Tail |
Organism | Periconia macrospinosa |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Pleosporomycetidae> Pleosporales> Massarineae> Periconiaceae> Periconia.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.246 |
Instability index | 46.50 |
Isoelectric point | 6.95 |
Molecular weight | 108850.12 |
Publications | PubMed=29679020
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP20782
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 194.65| 47| 47| 101| 147| 1
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53- 98 (51.76/28.74) .......IAWSKNGCVAYITPDryAVHIRV.FSRDPSTGKWDL.....GKAtpvDIPHG
101- 147 (80.64/48.96) DFPFV.HVSWSNLGNDLSIINA..AGQVMI.FSCAMALDRMGY.....MRS...ELTHP
150- 197 (62.25/36.09) DMDFViGMHW......LAIMPH..EQQNQIaWSANKIGDTWSFhieqhHFK...HMHHP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 60.72| 17| 47| 214| 232| 2
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214- 230 (32.93/20.50) RLRFQQPDSSWQ....EVGSP
264- 284 (27.79/10.54) RLHLYRVETSWNvpplKPGQP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 52.96| 15| 16| 888| 902| 3
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888- 902 (26.99/14.05) SAQPHHGALSRSAKR
907- 921 (25.97/13.28) SIQSAGGAGNVDDKR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 140.41| 46| 102| 670| 722| 4
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670- 722 (63.07/61.72) YIIDDLLELSRGLTK..PGAPPLTKDlLEATLHQSKRPaLlflLSGfpRTMLKLW
768- 815 (77.34/48.70) YLIREVEHLVRGCYRrdPSASKEGKE.GEAARNQAERE.L...LAG..RIPEVLW
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 135.35| 42| 47| 451| 497| 5
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451- 497 (65.79/54.52) GTMAIISPDYsTEAVTSMSQSgfsfPPHEASLYTALSPNQCVAACMQ
500- 541 (69.56/42.66) GKITLRSMDY.THGSLSAAED....PDHRISAALAALALQTSTAANQ
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