<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20736

Description Uncharacterized protein
SequenceMGNNLSALHSAAMEGDVHKLRVAVQEQPQRINEAEPSQGWTPAHIVAAKGYDVMLRELAARGAELNAPDKDGRTPLHLAAGAGHLQVVQDLLARRADAGLRDREGHLALDLAVAGQHGAVAAVLQRATPAAALAAGPPPAAAAAAGGGGFGYPSVPPPGGAAGPVSLNLPSAPPAPPGGGGASAPGAPPGYLDYLHGGAGISSPGMYPAPAYDAGYAPAGAAAPGAPGAPAPGAGGGGAGYPAFSAPGAAGGGYAGPAQGALPTWPPRQQQQQQGGGGGGPPPPPPPAAPQGPPPVLSRVAEADEDDDWGQPSISTDWGSSRPADGAGGAPVGPAVASGLPSYGTGPPPPPPPGFGQPPPGGQLDMDAQAAAAEAARARLDKLTIVSKAAGAIGGAIGGAAVAGAKHLLGGLLNGARGGGGGGGGGGGGGGGPQAPQIMRPGGGGSASSGSSGPVLSGSSGAARHYTYEELFKATQGFSEANKLGAGGYGPVYRGVLDGVPVAVKCLDTSEGAMQGEREFLQEASILGRLHHPHIVLLIGLCPSCCMLVYELLDHGSLEEHVLGGGRGDLQWQDRVRITAEIASALLFLHSAPEPIIHLDLKPANVLLSRNLTSKIGDVGLSRLAPSLAPGAGASTVMDTRLVGTPAFMDPEYLRTGRFGPKSDVFSLGVVMMQLLTGQDARSVITTVEAALRRAQSDPASFAAVVDPRAGAWPLVEAASFAHLAARCAALRRSDRPELRSEVLPGLLQLADRARQYATTPAALAAAPTFRRLASLGAGGSAALDEPPSMFVCPITQEVMEDPVFASDGFTYERDAIAGWIANHNTSPMTNLPLAHAGLTPNNALRSSVREWLDQHPKYAASAGLR
Length866
PositionTail
OrganismRaphidocelis subcapitata
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> core chlorophytes> Chlorophyceae> CS clade> Sphaeropleales> Selenastraceae> Raphidocelis.
Aromaticity0.05
Grand average of hydropathy-0.102
Instability index51.86
Isoelectric point5.97
Molecular weight86541.33
Publications
PubMed=29795299

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20736
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     546.47|      63|      63|     275|     337|       1
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   23-   81 (60.52/11.91)	AV..QEQP.....QRINEAEPSQGWTPAHIVAAKG.............YDvmlRE.L..AA.RGA............ELnA.P....................DKDGRTPLHLAAG
   82-  159 (65.65/13.70)	AGhlQVVQDL..LARRADAGLRDREGH..LALDLAvagqhgavaavlqRA...TPaA.ALA.AGP............P....PAAA...........aaaG..GGGFGYPSVPPPG
  160-  211 (65.71/13.73)	GA..AG..PV..SLNLPSA.......PPAPPGGGG.............AS...AP........GA............PP.G............yldylhgG..AGISSPGMYPAPA
  212-  261 (69.24/14.96)	YD..AGYAP.......AGAAAPGAPGAPA.........................P.G.AGG.GGA...............GyPAFS............apG..AAGGGYAGPAQGA
  262-  288 (55.00/ 9.98)	LP..TWPP......RQQQQQQ...............................................................................G..GGGGGPPPPPPPA
  289-  354 (112.91/30.25)	AP..QGPPPV..LSRVAEADEDDDWGQPSISTDWG.............SS...RP.A.DGA.GGA............PV.G.PAVA.............sGlpSYGTGPPPPPPPG
  355-  431 (71.61/15.79)	FG..Q.PPPGgqLDMDAQAAAAEA.ARARLDKLTI.............VS...KA.A..GAiGGA............IG.G.AAVAgakhllggllngarG..GGGGGGGGGGGGG
  432-  491 (45.83/ 6.77)	GP..QA.PQI..M....RPG.....GGGSASS..G.............SS...GP.VlSGS.SGAarhytyeelfkaTQ.G.FSEA...........nklG..AGGYGP.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.45|      39|      56|     492|     531|       2
---------------------------------------------------------------------------
  492-  531 (62.70/41.07)	VYRgVLDGVPVAVKCLDTSEGAMQGE...REFLQEASILGRLH
  549-  590 (62.75/36.45)	VYE.LLDHGSLEEHVLGGGRGDLQWQdrvRITAEIASALLFLH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20736 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APAGAAAPGAPGAPAPGAGGGGAGYPAFSAPGAAGGGYAGPAQGALPTWPPRQQQQQQGGGGGGPPPPPPPAAPQGPPPVLSRVAEADEDDDWGQPSISTDWGSSRPADGAGGAPVGPAVASGLPSYGTGPPPPPPPGFGQPPPGGQLDMDAQAAAAEAARAR
2) GGAAGPVSLNLPSAPPAPPGGGGASAPGAPPGYLDYL
3) LNGARGGGGGGGGGGGGGGGPQAPQIMRPGGGGSASSGSSGPVL
217
159
413
379
195
456










Molecular Recognition Features






MoRF SequenceStartStop




NANANA