<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20735

Description Uncharacterized protein
SequenceMASADLVTQLQDQLHTVSKMFFDFVGILQRDAPPLPLDGEPLAPPPTAVTAAASAAAPGDGGPPAFDVEATTQLMASQLIAQFKATEALISALPPAPGPDGAAASDRARALQEEHAAVSAALDAAAAEAEAQLGELQRLFAELAAARLRDARAGVALPPLPAVD
Length164
PositionMiddle
OrganismRaphidocelis subcapitata
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> core chlorophytes> Chlorophyceae> CS clade> Sphaeropleales> Selenastraceae> Raphidocelis.
Aromaticity0.04
Grand average of hydropathy0.157
Instability index44.28
Isoelectric point4.32
Molecular weight16605.57
Publications
PubMed=29795299

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20735
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.04|      16|      20|      36|      54|       1
---------------------------------------------------------------------------
   36-   51 (29.53/ 7.84)	PLDGEPLAPPPTAVTA
   58-   73 (27.51/10.11)	PGDGGPPAFDVEATTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.35|      27|      62|      74|     100|       2
---------------------------------------------------------------------------
   74-  100 (45.10/15.19)	LMASQLIAQFKATEALIS..............ALPPAPGPD
  102-  123 (32.72/ 9.55)	AAASDRARALQEEHAAVS..............A.....ALD
  124-  164 (34.53/10.38)	AAAAEAEAQLGELQRLFAelaaarlrdaragvALPPLPAVD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20735 with Med21 domain of Kingdom Viridiplantae
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