<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20731

Description Uncharacterized protein
SequenceMVGPRQSRHPELAQALARVQDVRHGVEEVLDACAGLPGSAPRVSARLHGVGSAVDALHALWPQLEDGGLLASGAAAARCEGDGAAGIAAGGGEQQEEALGEQQAPQQRPGARPAASPAPLALRDAVTAALPELGAPAKRQRLAGGGPGRWQYADRLLAVVEAVRTAAPGLQVELMNSFSNTRAHHPRQADEVRVLCPGVFCAAVAIAGGGRTQPVRVAVDAADAAPNAHAWATSQHQCFRRISALAALAAVHFSCGAAARQLLSTPAVSGGGGGGGGGAAGGLDGSGSGGDGGAGAAGLDALECLLLWLASYSDLFSRPCAVTGTLLCWEPASEVPLPPLVRPFKLSREQLAAAAGDPGLRMAWHAHAAPRDALLPRPPATGSGARTDDGDALSGLLQ
Length398
PositionTail
OrganismRaphidocelis subcapitata
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> core chlorophytes> Chlorophyceae> CS clade> Sphaeropleales> Selenastraceae> Raphidocelis.
Aromaticity0.04
Grand average of hydropathy-0.016
Instability index48.62
Isoelectric point6.26
Molecular weight39991.59
Publications
PubMed=29795299

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20731
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.24|      14|      15|     270|     284|       1
---------------------------------------------------------------------------
  270-  284 (26.53/ 9.87)	GGGGGGGGGAAgGLD
  287-  300 (30.72/ 8.69)	GSGGDGGAGAA.GLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.90|      25|      28|      98|     124|       2
---------------------------------------------------------------------------
   98-  124 (40.85/19.12)	ALGEQQAPQQRPgaRPA.ASPAPLALRD
  129-  154 (43.05/15.80)	ALPELGAPAKRQ..RLAgGGPGRWQYAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.36|      20|      22|      18|      37|       3
---------------------------------------------------------------------------
   18-   37 (36.68/19.12)	RVQDVRHGVEEVLDACAGL.P
   42-   62 (30.68/14.92)	RVSARLHGVGSAVDALHALwP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.08|      16|      56|     308|     324|       4
---------------------------------------------------------------------------
  308-  324 (29.14/20.27)	WLASYS..D.LFSRPCAvTG
  364-  382 (24.94/12.37)	WHAHAAprDaLLPRPPA.TG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.67|      17|     115|      79|      95|       5
---------------------------------------------------------------------------
   79-   95 (33.34/14.54)	CEGDGAAGIA.AGGGEQQ
  196-  213 (30.34/12.57)	CPGVFCAAVAiAGGGRTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.64|      10|      22|     216|     225|       6
---------------------------------------------------------------------------
  216-  225 (16.15/ 7.98)	RVAVDAADAA
  241-  250 (15.49/ 7.35)	RISALAALAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20731 with Med27 domain of Kingdom Viridiplantae
Unable to open file!