<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20731

Description Uncharacterized protein
SequenceMVGPRQSRHPELAQALARVQDVRHGVEEVLDACAGLPGSAPRVSARLHGVGSAVDALHALWPQLEDGGLLASGAAAARCEGDGAAGIAAGGGEQQEEALGEQQAPQQRPGARPAASPAPLALRDAVTAALPELGAPAKRQRLAGGGPGRWQYADRLLAVVEAVRTAAPGLQVELMNSFSNTRAHHPRQADEVRVLCPGVFCAAVAIAGGGRTQPVRVAVDAADAAPNAHAWATSQHQCFRRISALAALAAVHFSCGAAARQLLSTPAVSGGGGGGGGGAAGGLDGSGSGGDGGAGAAGLDALECLLLWLASYSDLFSRPCAVTGTLLCWEPASEVPLPPLVRPFKLSREQLAAAAGDPGLRMAWHAHAAPRDALLPRPPATGSGARTDDGDALSGLLQ
Length398
PositionTail
OrganismRaphidocelis subcapitata
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> core chlorophytes> Chlorophyceae> CS clade> Sphaeropleales> Selenastraceae> Raphidocelis.
Aromaticity0.04
Grand average of hydropathy-0.016
Instability index48.62
Isoelectric point6.26
Molecular weight39991.59
Publications
PubMed=29795299

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20731
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.24|      14|      15|     270|     284|       1
---------------------------------------------------------------------------
  270-  284 (26.53/ 9.87)	GGGGGGGGGAAgGLD
  287-  300 (30.72/ 8.69)	GSGGDGGAGAA.GLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.90|      25|      28|      98|     124|       2
---------------------------------------------------------------------------
   98-  124 (40.85/19.12)	ALGEQQAPQQRPgaRPA.ASPAPLALRD
  129-  154 (43.05/15.80)	ALPELGAPAKRQ..RLAgGGPGRWQYAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.36|      20|      22|      18|      37|       3
---------------------------------------------------------------------------
   18-   37 (36.68/19.12)	RVQDVRHGVEEVLDACAGL.P
   42-   62 (30.68/14.92)	RVSARLHGVGSAVDALHALwP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.08|      16|      56|     308|     324|       4
---------------------------------------------------------------------------
  308-  324 (29.14/20.27)	WLASYS..D.LFSRPCAvTG
  364-  382 (24.94/12.37)	WHAHAAprDaLLPRPPA.TG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.67|      17|     115|      79|      95|       5
---------------------------------------------------------------------------
   79-   95 (33.34/14.54)	CEGDGAAGIA.AGGGEQQ
  196-  213 (30.34/12.57)	CPGVFCAAVAiAGGGRTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.64|      10|      22|     216|     225|       6
---------------------------------------------------------------------------
  216-  225 (16.15/ 7.98)	RVAVDAADAA
  241-  250 (15.49/ 7.35)	RISALAALAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20731 with Med27 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GDGAAGIAAGGGEQQEEALGEQQAPQQRPGARPAASPAPLA
81
121










Molecular Recognition Features






MoRF SequenceStartStop




1) AWHAHAAPRD
363
372