<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20704

Description GL18568 product from transcript GL18568-RA
SequenceMLRSPNKTNAMKQWEQRWIKNCLCGDLDSPDQTWTHLDSPGLTLSDLDSPDQTWTHLDSPHQTWTHLDSPDQTWTHLIRPGLTWTHLIRPGLTWTHLDSPYQTWTHLIRPGLTSSDLDSPGLTLSDLDSPDQTWTHLDSPYQTCTHLISPDHT
Length153
PositionTail
OrganismScophthalmus maximus (Turbot) (Psetta maxima)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Carangaria> Pleuronectiformes> Pleuronectoidei> Scophthalmidae> Scophthalmus.
Aromaticity0.08
Grand average of hydropathy-0.805
Instability index53.11
Isoelectric point5.16
Molecular weight17608.22
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20704
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     252.34|      18|      18|      34|      51|       1
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   14-   31 (31.80/10.63)	WEQRWIKNCLCGDLDSPD
   34-   51 (42.68/16.13)	WTHLDSPGLTLSDLDSPD
   54-   71 (44.39/16.99)	WTHLDSPHQTWTHLDSPD
   84-  101 (43.78/16.69)	WTHLIRPGLTWTHLDSPY
  104-  116 (23.01/ 6.19)	WTHLIRPGLTSSD.....
  118-  131 (25.08/ 7.24)	....DSPGLTLSDLDSPD
  134-  151 (41.61/15.59)	WTHLDSPYQTCTHLISPD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20704 with Med16 domain of Kingdom Metazoa
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