<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20703

Description Putative PHD finger protein 19
SequenceMSDAVNVGVNLDAFSHAINGIQALRSSVSRVFESLKDGMKNRETLEGREKQFISEFQDHLQAVNRDLTELERLSGLVGRPSESHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYHAGLASSLLNQQSLKRSANQMGASAKRRPKVQPSTLVLPPQYVDDVISRIGRMFPDMTIELFRPNGTSAVLLVTLGKVLKAIVVMRSLFIDRTIVRGFNENVYNEDGKVRGDVTGHLSFCLSVSMVTCLSVCLSVLLSWTSGPSLSTRCSRRMMLNDRWTIMNNSSSELDSKRPNKHKKCCSFLLWFAVVLVVIAAVVTVTVTILYLNQYPLPFISRGGVSSSPVISTNPRESGALVTVSRVTAGEPISIFLDPNCPDHSEIFLRWEELQSSLLRALTNHNTGDWQERGLVQRLGEELKVLSGHAHNMRVEADSLKRGQGVLDQRLDELQREQSRTLQLQSDAHSAVLKLAAGFSDSLLGLQRETESLRRLKGELQTHNKNTALRPRHCSDVMASGVSQDGVYSVFPTHNPDGFMVYCDMTTDGGGWTVIQRREDGSVNFFRGWEAYRDGFGTTTGEHWLGLQRMYSLTRSGGVELRIDMADFDNATAFARYADFSVGRDSVNPEEDGYPLTVDQYSGTAGDSLLKHSGMRFTTSDRDHDQSENNCAAYYQGAWWYRNCHTSNLNGQYLRGGHTSYADGVEWSSWTGWQYSLRMFEDLVEAFCDLEPQVSPGGGACQRGQGLEEEEGEESSLSVGQFVLCHWSDGLYYLGKIQRVSPPRHSCFVTFEDNSKFWVLWKDIQHAGLPGEEPRCSVCRGVEANSDGQSNNQILICGKCGIGFHQQCHVPPVEGSNSHSPWFCRRCVFALAVRKGGALKKGPIAKVLSAMKQVLLYDPDSLDWDSQHRTNQQQCYCYCGGPGEWYLKMLQCLRCQQWFHEACTQGLQESMMFGDRFYLFLCSVCNKGSEYVRRLSLRWVDLVHLVLYNLSVSSKKKYFELDEILAFVSANWDHLQLGKLSNTPPADRGQHLLDALNKYKSKFLCGKEIKKRKCIFRLRTRVPPNPPSKLFPERAQNEGGRGRKKSVVRNSTAAERKSRKSKWLLEDAIPNSEFSCSWTSNHHMANIFDFTLDELQSLKSRTVSTDQDSTDASTSGSASTSASYSFRYIRSLTSLRTSDLVSETFDLCVRRRRLSSDSSHLHSSISSYFGAAGRLTNGERYQVLARRVTPQGTVQYLLEWEGTTPY
Length1240
PositionTail
OrganismScophthalmus maximus (Turbot) (Psetta maxima)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Carangaria> Pleuronectiformes> Pleuronectoidei> Scophthalmidae> Scophthalmus.
Aromaticity0.09
Grand average of hydropathy-0.416
Instability index46.70
Isoelectric point8.35
Molecular weight139315.73
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
metal ion binding	GO:0046872	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20703
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.27|      20|      29|     532|     551|       1
---------------------------------------------------------------------------
  532-  551 (41.79/19.46)	GFMVYCD..MTTDGGGWTVIQR
  562-  583 (36.48/16.25)	GWEAYRDgfGTTTGEHWLGLQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     254.21|      60|     104|     756|     815|       2
---------------------------------------------------------------------------
  668-  740 (55.16/28.92)	..........YYQGAWW.....YRNCH.TSNLNGQYlrgghtsyadgveWSSWTgwqyslrmfedlveafcDLEPQVSPGGGA.C.QRGQG
  756-  815 (114.46/68.47)	FVLCHWSDGLYYLGKIQRVSPPRHSCFVTFEDNSKF.............WVLWK.................DIQHAGLPGEEPRC.SVCRG
  863-  915 (84.59/48.55)	FALAVRKGGALKKGPIAKVLSAMKQVLL.YDPDSLD.............W.....................DSQH...RTNQQQCyCYCGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.73|      27|      30|     406|     435|       3
---------------------------------------------------------------------------
  407-  434 (41.59/29.51)	RG...LVQRLgEELKVLSGHAHNMRVEADS..L
  436-  467 (36.14/19.58)	RGqgvLDQRL.DELQREQSRTLQLQSDAHSavL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.45|      39|      96|     822|     861|       5
---------------------------------------------------------------------------
  822-  861 (74.63/43.53)	GQSNNQILICGKCGIGFHQQChVPPVEGSNSHSPWF....CRRC
  917-  959 (73.81/38.78)	GEWYLKMLQCLRCQQWFHEAC.TQGLQESMMFGDRFylflCSVC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     173.00|      44|     847|     334|     386|       6
---------------------------------------------------------------------------
   72-  113 (30.66/12.07)	.........RLSG...LVGRPSESHPLHnsglLSLDPvqdKTPLYS.QLLqaYKW.
  341-  386 (73.93/45.52)	SSPVISTNPRESGAlvTVSRVTAGEPIS....IFLDP...NCPDHS.EIF..LRWE
 1192- 1235 (68.41/36.04)	SSHLHSSISSYFGA...AGRLTNGERYQ....VLARR...VTPQGTvQYL..LEWE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20703 with Med27 domain of Kingdom Metazoa
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