<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20696

Description Putative F-box-like/WD repeat-containing protein TBL1XR1
SequenceMSISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAYRDKLAQQQQAAAGSGSSSTGSQGSTKNGEGAANGEENGSHALANHHSEMMEVDRDVEIPQSKAMVLRGHESEVFICAWNPVNDLLASGSGDSTARIWNLSENSTGGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPVKTFQGHTNEVNAIKWDPTGSLLASCSDDMTLKIWSMKQDSCVHDLQAHSKEIYTIKWSPTGPGTNNPSANLMLASASFDSTVRLWDVERGVCIHTLTRHQEPVYSVAFSPDGRHLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNATGDKVGASASDGSVCVLDLRK
Length514
PositionTail
OrganismScophthalmus maximus (Turbot) (Psetta maxima)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Carangaria> Pleuronectiformes> Pleuronectoidei> Scophthalmidae> Scophthalmus.
Aromaticity0.07
Grand average of hydropathy-0.332
Instability index37.31
Isoelectric point5.46
Molecular weight55640.21
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20696
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     386.77|      40|      40|     322|     361|       1
---------------------------------------------------------------------------
  165-  196 (41.18/17.29)	..........LRGHESEVFI.............CAWNPVN.........dlLASGSGD..STARI.W
  217-  253 (42.19/17.86)	EGGQDVP..S....NKDVTS.............LDWNSEG.........tlLATGSYD..GFARIwT
  254-  282 (36.87/14.86)	KDGN..LASTLGQHKGPIFA.............LKWNKKG..........nF............I.L
  283-  334 (46.32/20.18)	SAGVDKTTIIWDAHTGE..AkqqfpfhsapaldVDWQSNN..........tFASCSTD..MCIHV.C
  335-  376 (65.56/31.02)	KLGQDRPVKTFQGHTNEVNA.............IKWDPTG.........slLASCSDD..MTLKI.W
  377-  427 (59.32/27.50)	SMKQDSCVHDLQAHSKEIYT.............IKWSPTGpgtnnpsanlmLASASFD..STVRL.W
  428-  469 (60.17/27.99)	DVERGVCIHTLTRHQEPVYS.............VAFSPDG.........rhLASGSFD..KCVHI.W
  470-  509 (35.16/13.90)	NTQTGALVHSYRG.TGGIFE.............VCWNATG.........dkVGASASDgsVCV....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20696 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KLAQQQQAAAGSGSSSTGSQGSTKNGEGAANGEENGSHALANHHSEMMEVDRDVEIPQSKA
102
162










Molecular Recognition Features






MoRF SequenceStartStop




1) FLVYRYL
10
16