<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20672

Description mediator of RNA polymerase II transcription subunit 26
SequenceMTAAPPSPQQIRDRLLQAIDPQSNIRNMVAVQEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIEPVHQNEAALRGLAGAPGSANGGAHNCRPEAGAGGPPKSIHDLKNRNDIQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPRVSKVSHDSLVANSSPLPTNGISGSPESFPGPLDSSGHVGPEGSRLEHSENDKHSGKIPVNAVRPHTSSPGLGKPPRPCLQTKAVVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQRSSYTYKGARKRHVLVPHSPPTDLPGLSREVTQDDLDRIQAHQWPGVNGCHDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD
Length371
PositionUnknown
OrganismTursiops truncatus (Atlantic bottle-nosed dolphin) (Delphinus truncatus)
KingdomMetazoa
Lineage
Aromaticity0.03
Grand average of hydropathy-0.899
Instability index51.85
Isoelectric point9.58
Molecular weight40661.20
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP20672
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     330.90|      67|      68|     190|     257|       1
---------------------------------------------------------------------------
  139-  189 (54.87/20.78)	......QRLDRLGsRKRRGDQRDLG....HPGPPPrvSKVSHDSLVANSSPLPTNGI...SGSP............
  190-  243 (87.42/37.61)	..............ESFPGPLDSSG....HVGPEG..SRLEHSENDKHSGKIPVNAVRPHTSSPGLGKPPR..PCL
  245-  314 (96.84/43.53)	TKAVVLQQLDRVD.ET.PGPPHPKGpprcSFSPRN..SRHEGSFARQRSSYTYKGARKRHVLVP..HSPPTdlPGL
  315-  370 (91.77/37.79)	SREVTQDDLDRIQ...............aHQWP.G..VNGCHDTQGNWYDWTQCISLDPHGDDGRLNILPY..VCL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20672 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HQNEAALRGLAGAPGSANGGAHNCRPEAGAGGPPKSIHDLKNRNDIQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPRVSKVSHDSLVANSSPLPTNGISGSPESFPGPLDSSGHVGPEGSRLEHSENDKHSGKIPVNAVRPHTSSPGLGKPPRPCLQTKAVVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQRSSY
2) YKGARKRHVLVPHSPPTDLPGLSREVTQDDLDRIQAHQWP
88
293
291
332










Molecular Recognition Features






MoRF SequenceStartStop




1) QQIRDRLLQAID
2) YTYKGA
9
291
20
296