<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20656

Description F-box-like/WD repeat-containing protein TBL1X isoform X3
SequenceMTGSFRIQDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQASVAATAAAAAPAAPTAPAAVSQQNPPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKHLASGSFDKCVHIWNTQVIP
Length424
PositionTail
OrganismTursiops truncatus (Atlantic bottle-nosed dolphin) (Delphinus truncatus)
KingdomMetazoa
Lineage
Aromaticity0.07
Grand average of hydropathy-0.360
Instability index35.96
Isoelectric point5.61
Molecular weight45943.79
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20656
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     326.41|      39|      39|     272|     310|       1
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  108-  145 (40.20/17.79)	......PNKatVLRGHESE...........VFICAWNPVS.........dllASGSGDSTA.R...IW
  166-  200 (41.22/18.40)	EGGHDVP....S....NKD...........VTSLDWNSDG.........tllATGSYDGFA.R...I.
  201-  231 (38.13/16.56)	WTEDGNLAS..TLGQHKGP...........IFALKWNKKG.....................nY...IL
  232-  283 (44.99/20.64)	SAGVDKTTI..IWDAHTGEakqqfpfhsapALDVDWQNN..........ttfASCSTDMCI.H...VC
  284-  325 (64.43/32.23)	RLGCDRPVK..TFQGHTNE...........VNAIKWDPSG.........mllASCSDDMTL.K...IW
  326-  379 (48.28/22.61)	SMKQDTCVH..DLQAHSKE...........IYTIKWSPTGpatsnpnsnimlASASFDSTV.RlwdVE
  380-  417 (49.15/23.13)	RGVC...IH..TLTKHQEP...........VYSVAFSPDG.........khlASGSFDKCV.H...I.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20656 with Med16 domain of Kingdom Metazoa
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