<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20562

Description transcription elongation factor A protein 2
SequenceMMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKAREQRRGGPLPTSSSKEAPEAKDPRCRKRPELPRMPSAPRITTFPPVPVTCDAVRSKCREMLTAALQTDHDHMAVGADCEGLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRRKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
Length301
PositionUnknown
OrganismLeptonychotes weddellii (Weddell seal) (Otaria weddellii)
KingdomMetazoa
Lineage
Aromaticity0.03
Grand average of hydropathy-0.631
Instability index59.63
Isoelectric point9.33
Molecular weight33819.79
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20562
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.41|      17|      19|      81|      97|       1
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   81-   97 (30.16/16.67)	DASDAKAREQRRGGPLP
  103-  119 (32.25/18.28)	EAPEAKDPRCRKRPELP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.85|      17|      18|     172|     189|       2
---------------------------------------------------------------------------
  172-  189 (26.15/25.93)	IEECI..FRDVGNTDMKyKN
  191-  209 (23.70/16.45)	VRSRIsnLKDAKNPDLR.RN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.15|      14|      27|     258|     271|       3
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  258-  271 (29.25/14.78)	TDLFTCGKC..RRKNC
  286-  301 (25.90/12.46)	TTFVVCNECgnRWKFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.12|      11|      18|     139|     150|       4
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  139-  150 (15.90/11.62)	AVRSKCrEMLTA
  160-  170 (20.23/10.10)	AVGADC.EGLSA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20562 with Med26 domain of Kingdom Metazoa
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