<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20554

Description F-box-like/WD repeat-containing protein TBL1X
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQQASAAAATAATAATAAPAAVAQQHPPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTAFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length522
PositionTail
OrganismLeptonychotes weddellii (Weddell seal) (Otaria weddellii)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Carnivora> Caniformia> Phocidae> Leptonychotes.
Aromaticity0.07
Grand average of hydropathy-0.287
Instability index38.19
Isoelectric point5.46
Molecular weight56478.34
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20554
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     372.05|      40|      40|     330|     369|       1
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  161-  202 (46.81/26.51)	GdV..EIPPNK.ATVLRGHESE...........VFICAWNPVS.........dlL.ASGS.GDSTAR
  221-  258 (41.45/22.59)	H.CirEGGHDVP..S....NKD...........VTSLDWNSDG.........tlL.ATGS.YDGFAR
  259-  288 (29.97/14.19)	I....WTEDGNLASTLGQHKGP...........IFALKWNKKG..........nY............
  289-  340 (43.76/24.28)	I.L..SAGVDKTTIIWDAHTGEakqqfpfhsapALDVDWQNNT..........aF.ASCS.TDMCIH
  341-  382 (62.26/37.81)	V.C..RLGCDRPVKTFQGHTNE...........VNAIKWDPSG.........mlL.ASCS.DDMTLK
  383-  433 (55.80/33.09)	I.W..SMKQDTCVHDLQAHSKE...........IYTIKWSPTGpatsnpnsnimL.ASAS.FDSTVR
  437-  475 (48.02/27.40)	V.E..RGVC...IHTLTKHQEP...........VYSVAFSPDG..........kYlASGS.FDKCVH
  476-  517 (43.97/24.43)	I.W..NTQSGSLVHSYRG.TGG...........IFEVCWNARG........dkvG.ASASdGSVCV.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.99|      12|      21|     104|     123|       2
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  104-  115 (19.22/19.34)	AQQQQASAAAAT
  128-  139 (22.77/ 6.21)	AQQHPPKNGEAT
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.55|      24|      28|      30|      54|       3
---------------------------------------------------------------------------
   30-   54 (35.75/30.27)	IESHISqSNINGTLVP..PAALISILQ
   60-   85 (34.80/23.85)	VEAEIS.INEDGTVFDgrPIESLSLID
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20554 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATAAPAAVAQQHPPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKA
120
170










Molecular Recognition Features






MoRF SequenceStartStop




NANANA